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| Field | Value |
|---|---|
| Gene ID | Lj1g3v0984410 |
| Transcript ID | Lj1g3v0984410.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: pentatricopeptide repeat-containing protein At3g49240-like [Glycine max] gi|356516061|ref|XP_003526715.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 21 | 40 | 20 | 5.30E-270 | – | |
| PANTHER | 21 | 40 | 20 | 5.30E-270 | – | |
| MobiDBLite | 46 | 96 | 51 | – | – | |
| PANTHER | 58 | 533 | 476 | 5.30E-270 | – | |
| PANTHER | 58 | 533 | 476 | 5.30E-270 | – | |
| ProSiteProfiles | 136 | 170 | 35 | 8.079 | ||
| ProSiteProfiles | 171 | 206 | 36 | 6.588 | ||
| ProSiteProfiles | 207 | 241 | 35 | 9.734 | ||
| Pfam | 210 | 239 | 30 | 0.067 | ||
| TIGRFAM | 210 | 242 | 33 | 3.10E-04 | ||
| ProSiteProfiles | 242 | 272 | 31 | 6.478 | ||
| ProSiteProfiles | 279 | 309 | 31 | 6.599 | ||
| Gene3D | 279 | 519 | 241 | 4.10E-21 | ||
| Pfam | 281 | 305 | 25 | 0.085 | ||
| SUPERFAMILY | 290 | 499 | 210 | 9.42E-13 | – | |
| ProSiteProfiles | 313 | 347 | 35 | 12.934 | ||
| Pfam | 315 | 343 | 29 | 7.40E-09 | ||
| TIGRFAM | 315 | 344 | 30 | 1.30E-08 | ||
| ProSiteProfiles | 353 | 387 | 35 | 11.915 | ||
| Pfam | 356 | 385 | 30 | 1.30E-05 | ||
| TIGRFAM | 356 | 389 | 34 | 1.30E-08 | ||
| Pfam | 387 | 434 | 48 | 7.30E-13 | ||
| ProSiteProfiles | 388 | 422 | 35 | 12.386 | ||
| TIGRFAM | 391 | 424 | 34 | 5.80E-07 | ||
| ProSiteProfiles | 423 | 457 | 35 | 11.959 | ||
| TIGRFAM | 425 | 458 | 34 | 5.70E-07 | ||
| ProSiteProfiles | 458 | 488 | 31 | 9.756 | ||
| Pfam | 461 | 488 | 28 | 1.70E-04 | ||
| TIGRFAM | 461 | 487 | 27 | 2.00E-05 | ||
| ProSiteProfiles | 492 | 522 | 31 | 7.355 | ||
| Coils | 541 | 580 | 40 | – | – | |
| MobiDBLite | 595 | 643 | 49 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of Lj1g3v0984410.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj1g3v0984410.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.