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| Field | Value |
|---|---|
| Gene ID | Lj1g3v0984440 |
| Transcript ID | Lj1g3v0984440.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | E3 ubiquitin ligase [Lotus japonicus] gi|379055945|emb|CCG06554.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 324 | 324 | 1.30E-271 | ||
| PANTHER | 1 | 324 | 324 | 1.30E-271 | – | |
| MobiDBLite | 23 | 48 | 26 | – | – | |
| Gene3D | 43 | 127 | 85 | 1.90E-11 | ||
| SUPERFAMILY | 51 | 104 | 54 | 1.58E-06 | – | |
| CDD | 61 | 101 | 41 | 0.00309054 | – | |
| ProSiteProfiles | 62 | 98 | 37 | 9.48 | ||
| Pfam | 104 | 303 | 200 | 8.50E-76 | ||
| SUPERFAMILY | 115 | 307 | 193 | 4.25E-50 | ||
| ProSiteProfiles | 115 | 175 | 61 | 14.109 | ||
| Gene3D | 128 | 170 | 43 | 3.90E-21 | ||
| CDD | 176 | 304 | 129 | 1.03E-66 | – | |
| Gene3D | 180 | 307 | 128 | 7.40E-60 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Biological process | Ubiquitin-dependent protein catabolic process | The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin group, or multiple ubiquitin groups, to the protein. | ||
| Biological process | Multicellular organism development | The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult). | ||
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. | ||
| Cellular component | Host cell nucleus | A membrane-bounded organelle as it is found in the host cell in which chromosomes are housed and replicated. The host is defined as the larger of the organisms involved in a symbiotic interaction. |
Expression pattern of Lj1g3v0984440.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj1g3v0984440.1, powered by CORGI.
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