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| Field | Value |
|---|---|
| Gene ID | Lj1g3v1077840 |
| Transcript ID | Lj1g3v1077840.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: DNA polymerase zeta catalytic subunit-like [Cicer arietinum] gi|502114426|ref|XP_004494955.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 18 | 18 | 0 | ||
| PANTHER | 1 | 18 | 18 | 0 | – | |
| PANTHER | 78 | 300 | 223 | 0 | ||
| PANTHER | 78 | 300 | 223 | 0 | – | |
| MobiDBLite | 305 | 391 | 87 | – | – | |
| PANTHER | 418 | 559 | 142 | 0 | ||
| PANTHER | 418 | 559 | 142 | 0 | – | |
| MobiDBLite | 617 | 648 | 32 | – | – | |
| MobiDBLite | 905 | 929 | 25 | – | – | |
| CDD | 935 | 1185 | 251 | 2.90E-68 | – | |
| SMART | 936 | 1442 | 507 | 3.30E-98 | ||
| PANTHER | 936 | 1072 | 137 | 0 | – | |
| PANTHER | 936 | 1072 | 137 | 0 | ||
| SUPERFAMILY | 937 | 1064 | 128 | 3.13E-43 | ||
| Gene3D | 937 | 1059 | 123 | 3.80E-53 | ||
| Pfam | 940 | 1072 | 133 | 3.80E-08 | ||
| Gene3D | 1096 | 1210 | 115 | 3.80E-53 | ||
| PANTHER | 1098 | 1776 | 679 | 0 | – | |
| PANTHER | 1098 | 1776 | 679 | 0 | ||
| SUPERFAMILY | 1098 | 1226 | 129 | 3.13E-43 | ||
| Pfam | 1197 | 1651 | 455 | 2.60E-96 | ||
| CDD | 1211 | 1659 | 449 | 0 | – | |
| SUPERFAMILY | 1250 | 1663 | 414 | 1.61E-109 | – | |
| Gene3D | 1251 | 1279 | 29 | 2.50E-12 | ||
| PRINTS | 1263 | 1276 | 14 | 2.20E-08 | ||
| Gene3D | 1334 | 1385 | 52 | 5.70E-07 | – | |
| PRINTS | 1372 | 1384 | 13 | 2.20E-08 | ||
| Gene3D | 1396 | 1507 | 112 | 2.50E-12 | ||
| PRINTS | 1428 | 1436 | 9 | 2.20E-08 | ||
| Pfam | 1696 | 1769 | 74 | 7.30E-11 | ||
| Coils | 1769 | 1777 | 9 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleotide binding | Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. | ||
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Molecular function | DNA-directed DNA polymerase activity | Catalysis of the reaction: deoxynucleoside triphosphate + DNA(n) = diphosphate + DNA(n+1); the synthesis of DNA from deoxyribonucleotide triphosphates in the presence of a DNA template and a 3'hydroxyl group. | ||
| Biological process | DNA repair | The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway. | ||
| Cellular component | Zeta DNA polymerase complex | A heterodimeric DNA polymerase complex that catalyzes error-prone DNA synthesis in contexts such as translesion synthesis and double-stranded break repair. First characterized in Saccharomyces, in which the subunits are Rev3p and Rev7p; a third protein, Rev1p, is often associated with the polymerase dimer. | ||
| Biological process | Translesion synthesis | The replication of damaged DNA by synthesis across a lesion in the template strand; a specialized DNA polymerase or replication complex inserts a defined nucleotide across from the lesion which allows DNA synthesis to continue beyond the lesion. This process can be mutagenic depending on the damaged nucleotide and the inserted nucleotide. |
Expression pattern of Lj1g3v1077840.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj1g3v1077840.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.