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Lj1g3v1255850.1

Overview

Field Value
Gene ID Lj1g3v1255850
Transcript ID Lj1g3v1255850.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: transcription factor MYB48-like [Glycine max] gi|356534882|ref|XP_003535980.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR10641:SF456
1 184 184 3.90E-122 –
PANTHER
PTHR10641
1 184 184 3.90E-122 –
ProSiteProfiles
PS51294
17 69 53 17.37
IPR017930
SMART
SM00717
21 71 51 9.50E-17
IPR001005
SUPERFAMILY
SSF46689
21 116 96 6.64E-30
IPR009057
Pfam
PF00249
22 69 48 1.50E-17
IPR001005
Gene3D
G3DSA:1.10.10.60
23 76 54 1.20E-23
IPR009057
CDD
cd00167
24 69 46 8.78E-12 –
ProSiteProfiles
PS51294
70 124 55 24.928
IPR017930
SMART
SM00717
74 122 49 5.80E-15
IPR001005
Pfam
PF00249
75 119 45 1.50E-14
IPR001005
Gene3D
G3DSA:1.10.10.60
77 123 47 1.70E-24
IPR009057
CDD
cd00167
79 120 42 4.58E-10 –
Coils
Coil
149 169 21 – –
PANTHER
PTHR10641
208 248 41 3.90E-122 –
PANTHER
PTHR10641:SF456
208 248 41 3.90E-122 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of

Genome browser

LORE1 insertions 10

Expression data

Expression pattern

Expression pattern of Lj1g3v1255850.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj1g3v1255850.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.