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| Field | Value |
|---|---|
| Gene ID | Lj1g3v1386420 |
| Transcript ID | Lj1g3v1386420.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp]. lyrata] gi|297810955|ref|XP_002873361.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| ProSiteProfiles | 5 | 39 | 35 | 7.498 | ||
| Pfam | 8 | 30 | 23 | 1.3 | ||
| Gene3D | 22 | 37 | 16 | 8.30E-08 | ||
| PANTHER | 31 | 353 | 323 | 0 | – | |
| PANTHER | 31 | 353 | 323 | 0 | – | |
| ProSiteProfiles | 77 | 107 | 31 | 5.875 | ||
| Pfam | 83 | 103 | 21 | 0.99 | ||
| ProSiteProfiles | 108 | 143 | 36 | 10.095 | ||
| TIGRFAM | 110 | 142 | 33 | 0.0029 | ||
| ProSiteProfiles | 145 | 179 | 35 | 6.555 | ||
| ProSiteProfiles | 180 | 211 | 32 | 7.366 | ||
| Pfam | 211 | 252 | 42 | 1.50E-09 | ||
| Gene3D | 211 | 370 | 160 | 8.30E-08 | ||
| ProSiteProfiles | 212 | 246 | 35 | 11.783 | ||
| TIGRFAM | 214 | 247 | 34 | 1.40E-06 | ||
| ProSiteProfiles | 286 | 316 | 31 | 8.364 | ||
| Pfam | 289 | 314 | 26 | 0.012 | ||
| ProSiteProfiles | 317 | 351 | 35 | 8.955 | ||
| TIGRFAM | 319 | 344 | 26 | 0.0018 | ||
| Pfam | 319 | 344 | 26 | 5.90E-04 | ||
| ProSiteProfiles | 353 | 387 | 35 | 5.426 | ||
| ProSiteProfiles | 389 | 419 | 31 | 7.465 | ||
| Pfam | 394 | 419 | 26 | 0.21 | ||
| ProSiteProfiles | 420 | 454 | 35 | 9.58 | ||
| Pfam | 422 | 452 | 31 | 0.24 | ||
| TIGRFAM | 422 | 456 | 35 | 6.00E-04 | ||
| ProSiteProfiles | 455 | 489 | 35 | 6.215 | ||
| ProSiteProfiles | 493 | 523 | 31 | 6.982 | ||
| PANTHER | 494 | 513 | 20 | 0 | – | |
| PANTHER | 494 | 513 | 20 | 0 | – | |
| Pfam | 498 | 523 | 26 | 0.032 | ||
| Gene3D | 501 | 584 | 84 | 8.30E-08 | ||
| ProSiteProfiles | 525 | 555 | 31 | 8.133 | ||
| TIGRFAM | 527 | 556 | 30 | 3.00E-04 | ||
| Pfam | 527 | 555 | 29 | 0.007 | ||
| PANTHER | 555 | 834 | 280 | 0 | – | |
| PANTHER | 555 | 834 | 280 | 0 | – | |
| ProSiteProfiles | 556 | 590 | 35 | 11.685 | ||
| TIGRFAM | 559 | 592 | 34 | 2.40E-06 | ||
| Pfam | 559 | 587 | 29 | 3.50E-04 | ||
| ProSiteProfiles | 625 | 655 | 31 | 5.875 | ||
| Pfam | 655 | 703 | 49 | 2.90E-10 | ||
| ProSiteProfiles | 656 | 690 | 35 | 12.31 | ||
| TIGRFAM | 658 | 691 | 34 | 4.40E-08 | ||
| ProSiteProfiles | 691 | 726 | 36 | 9.262 | ||
| TIGRFAM | 693 | 726 | 34 | 0.0014 | ||
| ProSiteProfiles | 727 | 757 | 31 | 6.708 | ||
| ProSiteProfiles | 793 | 827 | 35 | 6.906 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of Lj1g3v1386420.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj1g3v1386420.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.