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| Field | Value |
|---|---|
| Gene ID | Lj1g3v1386470 |
| Transcript ID | Lj1g3v1386470.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: pentatricopeptide repeat-containing protein At4g21065-like [Glycine max] gi|356518836|ref|XP_003528083.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 33 | 433 | 401 | 4.10E-212 | – | |
| ProSiteProfiles | 53 | 86 | 34 | 5.229 | ||
| ProSiteProfiles | 119 | 153 | 35 | 9.679 | ||
| TIGRFAM | 122 | 150 | 29 | 1.40E-04 | ||
| Gene3D | 123 | 195 | 73 | 2.60E-05 | ||
| Pfam | 124 | 150 | 27 | 3.60E-04 | ||
| TIGRFAM | 153 | 178 | 26 | 4.70E-04 | ||
| Pfam | 153 | 178 | 26 | 2.00E-04 | ||
| ProSiteProfiles | 154 | 184 | 31 | 5.546 | ||
| ProSiteProfiles | 189 | 223 | 35 | 5.733 | ||
| ProSiteProfiles | 224 | 254 | 31 | 7.728 | ||
| Gene3D | 227 | 298 | 72 | 2.60E-05 | ||
| TIGRFAM | 229 | 256 | 28 | 0.0021 | ||
| ProSiteProfiles | 255 | 289 | 35 | 12.748 | ||
| Pfam | 255 | 301 | 47 | 4.30E-10 | ||
| TIGRFAM | 257 | 290 | 34 | 5.40E-08 | ||
| ProSiteProfiles | 290 | 320 | 31 | 8.111 | ||
| TIGRFAM | 293 | 325 | 33 | 9.60E-04 | ||
| ProSiteProfiles | 326 | 356 | 31 | 6.445 | ||
| Pfam | 329 | 353 | 25 | 0.02 | ||
| Gene3D | 334 | 398 | 65 | 2.60E-05 | ||
| ProSiteProfiles | 358 | 388 | 31 | 5.448 | ||
| Pfam | 428 | 551 | 124 | 4.90E-36 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of Lj1g3v1386470.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj1g3v1386470.1, powered by CORGI.
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