Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

Lj1g3v1596900.1

Overview

Field Value
Gene ID Lj1g3v1596900
Transcript ID Lj1g3v1596900.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: LOW QUALITY PROTEIN: dynein light chain LC6, flagellar outer arm-like [Glycine max] gi|356543152|ref|XP_003540027.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
SUPERFAMILY
SSF54648
1 90 90 1.22E-29 –
Phobius
NON_CYTOPLASMIC_DOMAIN
1 66 66 – –
SMART
SM01375
1 90 90 8.20E-45
IPR001372
PANTHER
PTHR11886:SF22
1 99 99 1.80E-64 –
Gene3D
G3DSA:3.30.740.10
1 89 89 1.00E-33
IPR001372
PANTHER
PTHR11886
1 99 99 1.80E-64
IPR001372
Pfam
PF01221
5 89 85 5.70E-33
IPR001372
TMHMM
TMhelix
66 88 23 – –
Phobius
TRANSMEMBRANE
67 88 22 – –
Phobius
CYTOPLASMIC_DOMAIN
89 99 11 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0007017
Biological process Microtubule-based process Any cellular process that depends upon or alters the microtubule cytoskeleton, that part of the cytoskeleton comprising microtubules and their associated proteins.
Subterm of
GO:0030286
Cellular component Dynein complex Any of several large complexes that contain two or three dynein heavy chains and several light chains, and have microtubule motor activity.
Subterm of

Genome browser

LORE1 insertions

No LORE1 insertions have been found in the genomic region that overlaps with this gene.

Expression data

Expression pattern

Expression pattern of Lj1g3v1596900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj1g3v1596900.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.