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| Field | Value |
|---|---|
| Gene ID | Lj1g3v1720120 |
| Transcript ID | Lj1g3v1720120.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | Syntaxin-61 [Medicago truncatula] gi|357437661|ref|XP_003589106.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 309 | 309 | – | – | |
| PANTHER | 2 | 329 | 328 | 7.80E-88 | – | |
| PANTHER | 2 | 329 | 328 | 7.80E-88 | – | |
| Gene3D | 8 | 109 | 102 | 1.10E-16 | – | |
| SUPERFAMILY | 10 | 108 | 99 | 1.02E-18 | ||
| Pfam | 11 | 102 | 92 | 2.70E-17 | ||
| MobiDBLite | 138 | 183 | 46 | – | – | |
| TMHMM | 308 | 330 | 23 | – | – | |
| Phobius | 310 | 330 | 21 | – | – | |
| Phobius | 331 | 331 | 1 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Biological process | Vesicle-mediated transport | A cellular transport process in which transported substances are moved in membrane-bounded vesicles; transported substances are enclosed in the vesicle lumen or located in the vesicle membrane. The process begins with a step that directs a substance to the forming vesicle, and includes vesicle budding and coating. Vesicles are then targeted to, and fuse with, an acceptor membrane. | ||
| Biological process | Golgi vesicle transport | The directed movement of substances into, out of or within the Golgi apparatus, mediated by vesicles. |
Expression pattern of Lj1g3v1720120.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj1g3v1720120.3, powered by CORGI.
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