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IPR010989 is a SNARE.
<p>Soluble N-ethylmaleimide attachment protein receptor (SNARE) proteins are a family of membrane-associated proteins characterised by an α-helical coiled-coil domain called the SNARE motif [[cite:PUB00014049]]. These proteins are classified as v-SNAREs and t-SNAREs based on their localisation on vesicle or target membrane; another classification scheme defines R-SNAREs and Q-SNAREs, as based on the conserved arginine or glutamine residue in the centre of the SNARE motif. SNAREs are localised to distinct membrane compartments of the secretory and endocytic trafficking pathways, and contribute to the specificity of intracellular membrane fusion processes.</p> <p>The t-SNARE domain consists of a 4-helical bundle with a coiled-coil twist. The SNARE motif contributes to the fusion of two membranes. SNARE motifs fall into four classes: homologues of syntaxin 1a (t-SNARE), VAMP-2 (v-SNARE), and the N- and C-terminal SNARE motifs of SNAP-25. It is thought that one member from each class interacts to form a SNARE complex.</p> <p>The SNARE motif represented in this entry is found in the N-terminal domains of certain syntaxin family members: syntaxin 1a, which is required for neurotransmitter release[[cite:PUB00014050]], syntaxin 6, which is found in endosomal transport vesicles [[cite:PUB00014055]], yeast Sso1p [[cite:PUB00014051]], and Vam3p, a yeast syntaxin essential for vacuolar fusion [[cite:PUB00014052]]. The SNARE motifs in these proteins share structural similarity, despite having a low level of sequence similarity.</p>
This description is obtained from EB-eye REST.
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Biological process | Vesicle-mediated transport | A cellular transport process in which transported substances are moved in membrane-bounded vesicles; transported substances are enclosed in the vesicle lumen or located in the vesicle membrane. The process begins with a step that directs a substance to the forming vesicle, and includes vesicle budding and coating. Vesicles are then targeted to, and fuse with, an acceptor membrane. |
| Transcript | Name | Description | Predicted domains | Domain count |
|---|---|---|---|---|
| – | Syntaxin-132 [Medicago truncatula] gi|357453477|ref|XP_003597016.1| | 20 | ||
| – | PREDICTED: syntaxin-43-like [Glycine max] gi|356576833|ref|XP_003556534.1| | 20 | ||
| – | PREDICTED: syntaxin-related protein KNOLLE-like [Cicer arietinum] gi|502160171|ref|XP_004511657.1| | 9 | ||
| – | PREDICTED: syntaxin-32-like [Glycine max] gi|356515506|ref|XP_003526441.1| | 15 | ||
| – | PREDICTED: syntaxin-32-like [Glycine max] gi|356515506|ref|XP_003526441.1| | 8 | ||
| – | PREDICTED: syntaxin-81-like [Cicer arietinum] gi|502163736|ref|XP_004512932.1| | 13 | ||
| – | PREDICTED: syntaxin-132-like [Cicer arietinum] gi|502092006|ref|XP_004489690.1| | 8 | ||
| – | PREDICTED: vesicle transport v-SNARE 13-like isoform X1 [Cicer arietinum] gi|502128601|ref|XP_004500015.1| | 18 | ||
| – | PREDICTED: vesicle transport v-SNARE 13-like isoform X1 [Cicer arietinum] gi|502128601|ref|XP_004500015.1| | 18 | ||
| – | Syntaxin-61 [Medicago truncatula] gi|357437661|ref|XP_003589106.1| | 11 | ||
| – | Syntaxin-61 [Medicago truncatula] gi|357437661|ref|XP_003589106.1| | 12 | ||
| – | Syntaxin-61 [Medicago truncatula] gi|357437661|ref|XP_003589106.1| | 12 | ||
| – | PREDICTED: syntaxin-32-like [Glycine max] gi|356515506|ref|XP_003526441.1| | 19 | ||
| – | PREDICTED: syntaxin-32-like [Glycine max] gi|356515506|ref|XP_003526441.1| | 19 | ||
| – | PREDICTED: syntaxin-32-like [Glycine max] gi|356515506|ref|XP_003526441.1| | 19 | ||
| – | PREDICTED: vesicle transport v-SNARE 12-like [Cicer arietinum] gi|502094006|ref|XP_004490116.1| | 20 | ||
| – | Syntaxin-22 [Medicago truncatula] gi|357508487|ref|XP_003624532.1| | 18 | ||
| – | PREDICTED: syntaxin-43-like [Cicer arietinum] gi|502112650|ref|XP_004494399.1| | 20 | ||
| – | PREDICTED: syntaxin-81-like [Cicer arietinum] gi|502163736|ref|XP_004512932.1| | 14 | ||
| – | PREDICTED: vesicle transport v-SNARE 13-like [Cicer arietinum] gi|502091039|ref|XP_004489422.1| | 12 | ||
| – | PREDICTED: vesicle transport v-SNARE 12-like [Cicer arietinum] gi|502094006|ref|XP_004490116.1| | 20 | ||
| – | PREDICTED: vesicle transport v-SNARE 12-like [Cicer arietinum] gi|502094006|ref|XP_004490116.1| | 20 | ||
| – | PREDICTED: LOW QUALITY PROTEIN: syntaxin-22-like [Cucumis sativus] gi|449517098|ref|XP_004165583.1| | 6 | ||
| – | PREDICTED: LOW QUALITY PROTEIN: syntaxin-112-like [Cicer arietinum] gi|502161166|ref|XP_004512058.1| | 20 | ||
| – | PREDICTED: syntaxin-61-like [Glycine max] gi|356553080|ref|XP_003544886.1| | 19 | ||
| – | PREDICTED: syntaxin-61-like [Glycine max] gi|356553080|ref|XP_003544886.1| | 19 | ||
| – | PREDICTED: syntaxin-124-like [Cicer arietinum] gi|502077674|ref|XP_004485712.1| | 10 | ||
| – | PREDICTED: syntaxin-22-like [Glycine max] gi|356496277|ref|XP_003516995.1| | 21 | ||
| – | Syntaxin family protein [Medicago truncatula] gi|357479685|ref|XP_003610128.1| | 8 | ||
| – | Syntaxin family protein [Medicago truncatula] gi|357479685|ref|XP_003610128.1| | 12 | ||
| – | Syntaxin-61 [Medicago truncatula] gi|357437661|ref|XP_003589106.1| | 12 | ||
| – | PREDICTED: syntaxin-121-like [Cicer arietinum] gi|502122236|ref|XP_004497646.1| | 21 | ||
| – | Syntaxin-121 [Medicago truncatula] gi|357440101|ref|XP_003590328.1| | 22 | ||
| – | PREDICTED: syntaxin-43-like [Glycine max] gi|356576833|ref|XP_003556534.1| | 10 | ||
| – | PREDICTED: syntaxin-61-like [Glycine max] gi|356567342|ref|XP_003551880.1| | 20 | ||
| – | PREDICTED: syntaxin-124-like [Cicer arietinum] gi|502077674|ref|XP_004485712.1| | 21 | ||
| – | Syntaxin-61; TAIR: AT1G28490.1 syntaxin of plants 61; Swiss-Prot: sp|Q946Y7|SYP61_ARATH Syntaxin-61; TrEMBL-Plants: tr|I1M6Q8|I1M6Q8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0028700 | 19 | ||
| – | Syntaxin protein; TAIR: AT1G28490.2 syntaxin of plants 61; Swiss-Prot: sp|Q946Y7|SYP61_ARATH Syntaxin-61; TrEMBL-Plants: tr|I1M6Q9|I1M6Q9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0028700 | 17 | ||
| – | Syntaxin protein; TAIR: AT1G28490.3 syntaxin of plants 61; Swiss-Prot: sp|Q946Y7|SYP61_ARATH Syntaxin-61; TrEMBL-Plants: tr|I1M6Q9|I1M6Q9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0028700 | 19 | ||
| – | Syntaxin, putative; TAIR: AT5G05760.1 syntaxin of plants 31; Swiss-Prot: sp|Q9FFK1|SYP31_ARATH Syntaxin-31; TrEMBL-Plants: tr|A0A151S1L4|A0A151S1L4_CAJCA Syntaxin-31; Found in the gene: LotjaGi1g1v0079300 | 19 | ||
| – | Syntaxin, putative; TAIR: AT5G05760.1 syntaxin of plants 31; Swiss-Prot: sp|Q9FFK1|SYP31_ARATH Syntaxin-31; TrEMBL-Plants: tr|V7BA95|V7BA95_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0079300 | 10 | ||
| – | Vesicle transport V-SNARE protein; TAIR: AT3G29100.3 vesicle transport V-snare 13; Swiss-Prot: sp|Q9LVP9|VTI13_ARATH Vesicle transport v-SNARE 13; TrEMBL-Plants: tr|V7AY13|V7AY13_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0194600 | 19 | ||
| – | Syntaxin protein; TAIR: AT1G27700.1 Syntaxin/t-SNARE family protein; Swiss-Prot: sp|Q946Y7|SYP61_ARATH Syntaxin-61; TrEMBL-Plants: tr|A0A1J7GBB1|A0A1J7GBB1_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0360300 | 12 | ||
| – | Syntaxin protein; TAIR: AT1G27700.1 Syntaxin/t-SNARE family protein; Swiss-Prot: sp|Q946Y7|SYP61_ARATH Syntaxin-61; TrEMBL-Plants: tr|A0A1J7GBB1|A0A1J7GBB1_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0360300 | 12 | ||
| – | Syntaxin, putative; TAIR: AT3G24350.1 syntaxin of plants 32; Swiss-Prot: sp|Q9LK09|SYP32_ARATH Syntaxin-32; TrEMBL-Plants: tr|I3SC69|I3SC69_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0390200 | 19 | ||
| – | Syntaxin, putative; TAIR: AT3G24350.1 syntaxin of plants 32; Swiss-Prot: sp|Q9LK09|SYP32_ARATH Syntaxin-32; TrEMBL-Plants: tr|I3SC69|I3SC69_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0390200 | 19 | ||
| – | Syntaxin, putative; TAIR: AT3G24350.1 syntaxin of plants 32; Swiss-Prot: sp|Q9LK09|SYP32_ARATH Syntaxin-32; TrEMBL-Plants: tr|A0A0B2Q4J0|A0A0B2Q4J0_GLYSO Syntaxin-32; Found in the gene: LotjaGi1g1v0390200 | 19 | ||
| – | Syntaxin, putative; TAIR: AT3G24350.1 syntaxin of plants 32; Swiss-Prot: sp|Q9LK09|SYP32_ARATH Syntaxin-32; TrEMBL-Plants: tr|I3SC69|I3SC69_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0390200 | 19 | ||
| – | Syntaxin, putative; TAIR: AT3G24350.1 syntaxin of plants 32; Swiss-Prot: sp|Q9LK09|SYP32_ARATH Syntaxin-32; TrEMBL-Plants: tr|A0A0B2Q4J0|A0A0B2Q4J0_GLYSO Syntaxin-32; Found in the gene: LotjaGi1g1v0390200 | 17 | ||
| – | Syntaxin, putative; TAIR: AT3G24350.1 syntaxin of plants 32; Swiss-Prot: sp|Q9LK09|SYP32_ARATH Syntaxin-32; TrEMBL-Plants: tr|I1K912|I1K912_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0390200 | 9 | ||
| – | Syntaxin-81 protein; TAIR: AT1G51740.1 syntaxin of plants 81; Swiss-Prot: sp|P59277|SYP81_ARATH Syntaxin-81; TrEMBL-Plants: tr|I3T4F4|I3T4F4_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0437700 | 13 | ||
| – | Syntaxin-81 protein; TAIR: AT1G51740.1 syntaxin of plants 81; Swiss-Prot: sp|P59277|SYP81_ARATH Syntaxin-81; TrEMBL-Plants: tr|I3T4F4|I3T4F4_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0437700 | 13 | ||
| – | Syntaxin-81 protein; TAIR: AT1G51740.1 syntaxin of plants 81; Swiss-Prot: sp|P59277|SYP81_ARATH Syntaxin-81; TrEMBL-Plants: tr|I3T4F4|I3T4F4_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0437700 | 14 | ||
| – | Vesicle transport v-SNARE family protein; TAIR: AT3G29100.3 vesicle transport V-snare 13; Swiss-Prot: sp|Q9LVP9|VTI13_ARATH Vesicle transport v-SNARE 13; TrEMBL-Plants: tr|C6T736|C6T736_SOYBN Putative uncharacterized protein; Found in the gene: LotjaGi1g1v0506300 | 19 | ||
| – | Syntaxin-like protein; TAIR: AT5G46860.1 Syntaxin/t-SNARE family protein; Swiss-Prot: sp|P93654|SYP22_ARATH Syntaxin-22; TrEMBL-Plants: tr|I3S6S6|I3S6S6_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0636300 | 19 | ||
| – | Syntaxin, putative; TAIR: AT3G05710.2 syntaxin of plants 43; Swiss-Prot: sp|Q9SUJ1|SYP43_ARATH Syntaxin-43; TrEMBL-Plants: tr|C6TBP9|C6TBP9_SOYBN Putative uncharacterized protein; Found in the gene: LotjaGi1g1v0761800 | 21 | ||
| – | Syntaxin, putative; TAIR: AT1G08560.1 syntaxin of plants 111; Swiss-Prot: sp|Q42374|SY111_ARATH Syntaxin-related protein KNOLLE; TrEMBL-Plants: tr|V7C3E5|V7C3E5_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0104900 | 22 | ||
| – | Syntaxin, putative; TAIR: AT1G08560.1 syntaxin of plants 111; Swiss-Prot: sp|Q42374|SY111_ARATH Syntaxin-related protein KNOLLE; TrEMBL-Plants: tr|V7C3E5|V7C3E5_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0104900 | 22 | ||
| – | Syntaxin-81 protein; TAIR: AT1G51740.1 syntaxin of plants 81; Swiss-Prot: sp|P59277|SYP81_ARATH Syntaxin-81; TrEMBL-Plants: tr|I3SCI3|I3SCI3_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0209400 | 13 | ||
| – | Vesicle transport v-SNARE family protein; TAIR: AT3G29100.3 vesicle transport V-snare 13; Swiss-Prot: sp|Q9LVP9|VTI13_ARATH Vesicle transport v-SNARE 13; TrEMBL-Plants: tr|I3SU58|I3SU58_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0261800 | 19 | ||
| – | Vesicle transport v-SNARE family protein; TAIR: AT3G29100.3 vesicle transport V-snare 13; Swiss-Prot: sp|Q9LVP9|VTI13_ARATH Vesicle transport v-SNARE 13; TrEMBL-Plants: tr|I3SU58|I3SU58_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0261800 | 19 | ||
| – | Vesicle transport v-SNARE family protein; TAIR: AT1G26670.1 Vesicle transport v-SNARE family protein; Swiss-Prot: sp|Q9SEL5|VTI12_ARATH Vesicle transport v-SNARE 12; TrEMBL-Plants: tr|A0A1J7HNX3|A0A1J7HNX3_LUPAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0300300 | 21 | ||
| – | Vesicle transport v-SNARE family protein; TAIR: AT1G26670.1 Vesicle transport v-SNARE family protein; Swiss-Prot: sp|Q9SEL5|VTI12_ARATH Vesicle transport v-SNARE 12; TrEMBL-Plants: tr|A0A1J7HNX3|A0A1J7HNX3_LUPAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0300300 | 25 | ||
| – | Vesicle transport v-SNARE family protein; TAIR: AT1G26670.1 Vesicle transport v-SNARE family protein; Swiss-Prot: sp|Q9SEL5|VTI12_ARATH Vesicle transport v-SNARE 12; TrEMBL-Plants: tr|A0A1J7HNX3|A0A1J7HNX3_LUPAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0300300 | 21 | ||
| – | Vesicle transport v-SNARE family protein; TAIR: AT1G26670.1 Vesicle transport v-SNARE family protein; Swiss-Prot: sp|Q9SEL5|VTI12_ARATH Vesicle transport v-SNARE 12; TrEMBL-Plants: tr|A0A1J7IVB9|A0A1J7IVB9_LUPAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0300300 | 21 | ||
| – | Syntaxin; TAIR: AT5G46860.1 Syntaxin/t-SNARE family protein; Swiss-Prot: sp|P93654|SYP22_ARATH Syntaxin-22; TrEMBL-Plants: tr|I1J4T0|I1J4T0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0335500 | 19 | ||
| – | Syntaxin, putative; TAIR: AT2G18260.1 syntaxin of plants 112; Swiss-Prot: sp|Q9ZPV9|SY112_ARATH Syntaxin-112; TrEMBL-Plants: tr|V7CHX3|V7CHX3_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0388600 | 25 | ||
| – | Syntaxin, putative; TAIR: AT2G18260.1 syntaxin of plants 112; Swiss-Prot: sp|Q9ZPV9|SY112_ARATH Syntaxin-112; TrEMBL-Plants: tr|A0A1J7FX73|A0A1J7FX73_LUPAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0388600 | 20 | ||
| – | Syntaxin, putative; TAIR: AT3G03800.1 syntaxin of plants 131; Swiss-Prot: sp|Q9SRV7|SY131_ARATH Putative syntaxin-131; TrEMBL-Plants: tr|I3SMC6|I3SMC6_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0190600 | 21 | ||
| – | Syntaxin, putative; TAIR: AT3G03800.1 syntaxin of plants 131; Swiss-Prot: sp|Q9SRV7|SY131_ARATH Putative syntaxin-131; TrEMBL-Plants: tr|G7IKJ7|G7IKJ7_MEDTR Syntaxin of plants 122 protein; Found in the gene: LotjaGi3g1v0190600 | 21 | ||
| – | Syntaxin, putative; TAIR: AT1G61290.1 syntaxin of plants 124; Swiss-Prot: sp|O64791|SY124_ARATH Syntaxin-124; TrEMBL-Plants: tr|G7ILD5|G7ILD5_MEDTR Syntaxin of plants 122 protein; Found in the gene: LotjaGi4g1v0050100 | 22 | ||
| – | Syntaxin; TAIR: AT5G46860.1 Syntaxin/t-SNARE family protein; Swiss-Prot: sp|P93654|SYP22_ARATH Syntaxin-22; TrEMBL-Plants: tr|I3SK89|I3SK89_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0169100 | 21 | ||
| – | Syntaxin protein; TAIR: AT2G18860.1 Syntaxin/t-SNARE family protein; Swiss-Prot: sp|Q946Y7|SYP61_ARATH Syntaxin-61; TrEMBL-Plants: tr|I1MSR2|I1MSR2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0300400 | 11 | ||
| – | Syntaxin protein; TAIR: AT1G27700.1 Syntaxin/t-SNARE family protein; Swiss-Prot: sp|Q946Y7|SYP61_ARATH Syntaxin-61; TrEMBL-Plants: tr|I1MXJ2|I1MXJ2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0032000 | 12 | ||
| – | Syntaxin, putative; TAIR: AT3G11820.1 syntaxin of plants 121; Swiss-Prot: sp|Q9ZSD4|SY121_ARATH Syntaxin-121; TrEMBL-Plants: tr|A0A1J7FR38|A0A1J7FR38_LUPAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0106300 | 21 | ||
| – | Syntaxin, putative; TAIR: AT3G11820.1 syntaxin of plants 121; Swiss-Prot: sp|Q9ZSD4|SY121_ARATH Syntaxin-121; TrEMBL-Plants: tr|B7FI20|B7FI20_MEDTR Syntaxin of plants 122 protein; Found in the gene: LotjaGi5g1v0106400 | 23 | ||
| – | Syntaxin, putative; TAIR: AT3G05710.2 syntaxin of plants 43; Swiss-Prot: sp|Q9SUJ1|SYP43_ARATH Syntaxin-43; TrEMBL-Plants: tr|A0A151U526|A0A151U526_CAJCA Syntaxin-43; Found in the gene: LotjaGi5g1v0228300 | 21 | ||
| – | Syntaxin, putative; TAIR: AT3G05710.2 syntaxin of plants 43; Swiss-Prot: sp|Q9SUJ1|SYP43_ARATH Syntaxin-43; TrEMBL-Plants: tr|A0A151U526|A0A151U526_CAJCA Syntaxin-43; Found in the gene: LotjaGi5g1v0228300 | 21 | ||
| – | Syntaxin, putative; TAIR: AT3G05710.1 syntaxin of plants 43; Swiss-Prot: sp|Q9SUJ1|SYP43_ARATH Syntaxin-43; TrEMBL-Plants: tr|A0A0L9TY73|A0A0L9TY73_PHAAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0228300 | 16 | ||
| – | Syntaxin, putative; TAIR: AT3G05710.2 syntaxin of plants 43; Swiss-Prot: sp|Q9SUJ1|SYP43_ARATH Syntaxin-43; TrEMBL-Plants: tr|A0A151U526|A0A151U526_CAJCA Syntaxin-43; Found in the gene: LotjaGi5g1v0228300 | 17 | ||
| – | Syntaxin protein; TAIR: AT1G28490.1 syntaxin of plants 61; Swiss-Prot: sp|Q946Y7|SYP61_ARATH Syntaxin-61; TrEMBL-Plants: tr|A0A151SBR2|A0A151SBR2_CAJCA Syntaxin-61; Found in the gene: LotjaGi6g1v0159100 | 20 | ||
| – | Syntaxin, putative; TAIR: AT1G61290.1 syntaxin of plants 124; Swiss-Prot: sp|O64791|SY124_ARATH Syntaxin-124; TrEMBL-Plants: tr|G7ILD5|G7ILD5_MEDTR Syntaxin of plants 122 protein; Found in the gene: LotjaGi6g1v0338200 | 22 |
A list of co-occurring predicted domains within the L. japonicus gene space:
| Predicted domain | Source | Observations | Saturation (%) |
|---|---|---|---|
| cd15848 | CDD | 1 | 1.22 |