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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR010989
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 82 results. Now displaying 1 of 2 with 50 rows per page. This search has taken 5.655s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0042819.1
n.a. Syntaxin-132 [Medicago truncatula] gi|357453477|ref|XP_003597016.1| chr0 14066548 14070019 +
2 domain predictions
2 GO terms
Lj0g3v0060129.1
n.a. PREDICTED: syntaxin-43-like [Glycine max] gi|356576833|ref|XP_003556534.1| chr0 19992423 19997324 -
2 domain predictions
2 GO terms
Lj0g3v0109479.1
n.a. PREDICTED: syntaxin-related protein KNOLLE-like [Cicer arietinum] gi|502160171|ref|XP_004511657.1| chr0 47422740 47423516 +
2 domain predictions
2 GO terms
Lj0g3v0163669.1
n.a. PREDICTED: syntaxin-32-like [Glycine max] gi|356515506|ref|XP_003526441.1| chr0 77392984 77396452 +
2 domain predictions
2 GO terms
Lj0g3v0163679.2
n.a. PREDICTED: syntaxin-32-like [Glycine max] gi|356515506|ref|XP_003526441.1| chr0 77398734 77399714 +
2 domain predictions
2 GO terms
Lj0g3v0253859.1
n.a. PREDICTED: syntaxin-81-like [Cicer arietinum] gi|502163736|ref|XP_004512932.1| chr0 131720180 131725136 +
2 domain predictions
2 GO terms
Lj0g3v0297799.1
n.a. PREDICTED: syntaxin-132-like [Cicer arietinum] gi|502092006|ref|XP_004489690.1| chr0 154823011 154826898 +
2 domain predictions
2 GO terms
Lj1g3v0525430.1
n.a. PREDICTED: vesicle transport v-SNARE 13-like isoform X1 [Cicer arietinum] gi|502128601|ref|XP_004500015.1| chr1 6601595 6603222 -
2 domain predictions
2 GO terms
Lj1g3v0525430.2
n.a. PREDICTED: vesicle transport v-SNARE 13-like isoform X1 [Cicer arietinum] gi|502128601|ref|XP_004500015.1| chr1 6601595 6605933 -
2 domain predictions
2 GO terms
Lj1g3v1720120.1
n.a. Syntaxin-61 [Medicago truncatula] gi|357437661|ref|XP_003589106.1| chr1 20225210 20228349 -
2 domain predictions
2 GO terms
Lj1g3v1720120.2
n.a. Syntaxin-61 [Medicago truncatula] gi|357437661|ref|XP_003589106.1| chr1 20225210 20228349 -
2 domain predictions
2 GO terms
Lj1g3v1720120.3
n.a. Syntaxin-61 [Medicago truncatula] gi|357437661|ref|XP_003589106.1| chr1 20225980 20228349 -
2 domain predictions
2 GO terms
Lj1g3v1931430.1
n.a. PREDICTED: syntaxin-32-like [Glycine max] gi|356515506|ref|XP_003526441.1| chr1 23024096 23028842 -
2 domain predictions
2 GO terms
Lj1g3v1931430.2
n.a. PREDICTED: syntaxin-32-like [Glycine max] gi|356515506|ref|XP_003526441.1| chr1 23024096 23036129 -
2 domain predictions
2 GO terms
Lj1g3v1931430.3
n.a. PREDICTED: syntaxin-32-like [Glycine max] gi|356515506|ref|XP_003526441.1| chr1 23031281 23036129 -
2 domain predictions
2 GO terms
Lj1g3v2404350.1
n.a. PREDICTED: vesicle transport v-SNARE 12-like [Cicer arietinum] gi|502094006|ref|XP_004490116.1| chr1 28264189 28267169 -
2 domain predictions
2 GO terms
Lj1g3v3932450.1
n.a. Syntaxin-22 [Medicago truncatula] gi|357508487|ref|XP_003624532.1| chr1 45914239 45916614 +
2 domain predictions
2 GO terms
Lj1g3v4863130.1
n.a. PREDICTED: syntaxin-43-like [Cicer arietinum] gi|502112650|ref|XP_004494399.1| chr1 58943122 58947381 -
2 domain predictions
2 GO terms
Lj2g3v0741700.1
n.a. PREDICTED: syntaxin-81-like [Cicer arietinum] gi|502163736|ref|XP_004512932.1| chr2 11619802 11624409 +
2 domain predictions
2 GO terms
Lj2g3v1068710.1
n.a. PREDICTED: vesicle transport v-SNARE 13-like [Cicer arietinum] gi|502091039|ref|XP_004489422.1| chr2 17174265 17177732 -
2 domain predictions
2 GO terms
Lj2g3v1277490.1
n.a. PREDICTED: vesicle transport v-SNARE 12-like [Cicer arietinum] gi|502094006|ref|XP_004490116.1| chr2 20306511 20310708 +
2 domain predictions
2 GO terms
Lj2g3v1277490.2
n.a. PREDICTED: vesicle transport v-SNARE 12-like [Cicer arietinum] gi|502094006|ref|XP_004490116.1| chr2 20307733 20310708 +
2 domain predictions
2 GO terms
Lj2g3v1498190.1
n.a. PREDICTED: LOW QUALITY PROTEIN: syntaxin-22-like [Cucumis sativus] gi|449517098|ref|XP_004165583.1| chr2 23712413 23713405 -
2 domain predictions
2 GO terms
Lj2g3v1734770.1
n.a. PREDICTED: LOW QUALITY PROTEIN: syntaxin-112-like [Cicer arietinum] gi|502161166|ref|XP_004512058.1| chr2 26820943 26822552 +
2 domain predictions
2 GO terms
Lj2g3v3164130.1
n.a. PREDICTED: syntaxin-61-like [Glycine max] gi|356553080|ref|XP_003544886.1| chr2 40818175 40821900 -
2 domain predictions
2 GO terms
Lj2g3v3164130.2
n.a. PREDICTED: syntaxin-61-like [Glycine max] gi|356553080|ref|XP_003544886.1| chr2 40818175 40821900 -
2 domain predictions
2 GO terms
Lj4g3v0446730.1
n.a. PREDICTED: syntaxin-124-like [Cicer arietinum] gi|502077674|ref|XP_004485712.1| chr4 5998509 5999129 +
2 domain predictions
2 GO terms
Lj4g3v1107690.1
n.a. PREDICTED: syntaxin-22-like [Glycine max] gi|356496277|ref|XP_003516995.1| chr4 16337619 16341687 +
2 domain predictions
2 GO terms
Lj4g3v2094900.1
n.a. Syntaxin family protein [Medicago truncatula] gi|357479685|ref|XP_003610128.1| chr4 28818692 28821215 +
2 domain predictions
2 GO terms
Lj4g3v2094900.2
n.a. Syntaxin family protein [Medicago truncatula] gi|357479685|ref|XP_003610128.1| chr4 28818692 28823004 +
2 domain predictions
2 GO terms
Lj5g3v0308380.1
n.a. Syntaxin-61 [Medicago truncatula] gi|357437661|ref|XP_003589106.1| chr5 2853814 2858218 -
2 domain predictions
2 GO terms
Lj5g3v0841000.1
n.a. PREDICTED: syntaxin-121-like [Cicer arietinum] gi|502122236|ref|XP_004497646.1| chr5 12025047 12027462 +
2 domain predictions
2 GO terms
Lj5g3v0841020.1
n.a. Syntaxin-121 [Medicago truncatula] gi|357440101|ref|XP_003590328.1| chr5 12029050 12031471 +
2 domain predictions
2 GO terms
Lj5g3v1513570.1
n.a. PREDICTED: syntaxin-43-like [Glycine max] gi|356576833|ref|XP_003556534.1| chr5 22052234 22056128 +
2 domain predictions
2 GO terms
Lj6g3v0872240.2
n.a. PREDICTED: syntaxin-61-like [Glycine max] gi|356567342|ref|XP_003551880.1| chr6 8677106 8682514 +
2 domain predictions
2 GO terms
Lj6g3v2080290.1
n.a. PREDICTED: syntaxin-124-like [Cicer arietinum] gi|502077674|ref|XP_004485712.1| chr6 24476966 24477880 -
2 domain predictions
2 GO terms
LotjaGi1g1v0028700.1
n.a. Syntaxin-61; TAIR: AT1G28490.1 syntaxin of plants 61; Swiss-Prot: sp|Q946Y7|SYP61_ARATH Syntaxin-61; TrEMBL-Plants: tr|I1M6Q8|I1M6Q8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0028700 LjG1.1_chr1 3440644 3445247 +
2 domain predictions
2 GO terms
LotjaGi1g1v0028700.2
n.a. Syntaxin protein; TAIR: AT1G28490.2 syntaxin of plants 61; Swiss-Prot: sp|Q946Y7|SYP61_ARATH Syntaxin-61; TrEMBL-Plants: tr|I1M6Q9|I1M6Q9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0028700 LjG1.1_chr1 3441318 3444243 +
2 domain predictions
2 GO terms
LotjaGi1g1v0028700.3
n.a. Syntaxin protein; TAIR: AT1G28490.3 syntaxin of plants 61; Swiss-Prot: sp|Q946Y7|SYP61_ARATH Syntaxin-61; TrEMBL-Plants: tr|I1M6Q9|I1M6Q9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0028700 LjG1.1_chr1 3442271 3444243 +
2 domain predictions
2 GO terms
LotjaGi1g1v0079300.1
n.a. Syntaxin, putative; TAIR: AT5G05760.1 syntaxin of plants 31; Swiss-Prot: sp|Q9FFK1|SYP31_ARATH Syntaxin-31; TrEMBL-Plants: tr|A0A151S1L4|A0A151S1L4_CAJCA Syntaxin-31; Found in the gene: LotjaGi1g1v0079300 LjG1.1_chr1 11445547 11457003 -
2 domain predictions
2 GO terms
LotjaGi1g1v0079300.2
n.a. Syntaxin, putative; TAIR: AT5G05760.1 syntaxin of plants 31; Swiss-Prot: sp|Q9FFK1|SYP31_ARATH Syntaxin-31; TrEMBL-Plants: tr|V7BA95|V7BA95_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0079300 LjG1.1_chr1 11447280 11456902 -
2 domain predictions
2 GO terms
LotjaGi1g1v0194600.1
n.a. Vesicle transport V-SNARE protein; TAIR: AT3G29100.3 vesicle transport V-snare 13; Swiss-Prot: sp|Q9LVP9|VTI13_ARATH Vesicle transport v-SNARE 13; TrEMBL-Plants: tr|V7AY13|V7AY13_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0194600 LjG1.1_chr1 38639920 38647124 +
2 domain predictions
2 GO terms
LotjaGi1g1v0360300.1
n.a. Syntaxin protein; TAIR: AT1G27700.1 Syntaxin/t-SNARE family protein; Swiss-Prot: sp|Q946Y7|SYP61_ARATH Syntaxin-61; TrEMBL-Plants: tr|A0A1J7GBB1|A0A1J7GBB1_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0360300 LjG1.1_chr1 83534865 83539297 -
2 domain predictions
2 GO terms
LotjaGi1g1v0360300.2
n.a. Syntaxin protein; TAIR: AT1G27700.1 Syntaxin/t-SNARE family protein; Swiss-Prot: sp|Q946Y7|SYP61_ARATH Syntaxin-61; TrEMBL-Plants: tr|A0A1J7GBB1|A0A1J7GBB1_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0360300 LjG1.1_chr1 83534865 83539297 -
2 domain predictions
2 GO terms
LotjaGi1g1v0390200.1
n.a. Syntaxin, putative; TAIR: AT3G24350.1 syntaxin of plants 32; Swiss-Prot: sp|Q9LK09|SYP32_ARATH Syntaxin-32; TrEMBL-Plants: tr|I3SC69|I3SC69_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0390200 LjG1.1_chr1 87345581 87351032 -
2 domain predictions
2 GO terms
LotjaGi1g1v0390200.2
n.a. Syntaxin, putative; TAIR: AT3G24350.1 syntaxin of plants 32; Swiss-Prot: sp|Q9LK09|SYP32_ARATH Syntaxin-32; TrEMBL-Plants: tr|I3SC69|I3SC69_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0390200 LjG1.1_chr1 87345581 87357655 -
2 domain predictions
2 GO terms
LotjaGi1g1v0390200.3
n.a. Syntaxin, putative; TAIR: AT3G24350.1 syntaxin of plants 32; Swiss-Prot: sp|Q9LK09|SYP32_ARATH Syntaxin-32; TrEMBL-Plants: tr|A0A0B2Q4J0|A0A0B2Q4J0_GLYSO Syntaxin-32; Found in the gene: LotjaGi1g1v0390200 LjG1.1_chr1 87345723 87357655 -
2 domain predictions
2 GO terms
LotjaGi1g1v0390200.4
n.a. Syntaxin, putative; TAIR: AT3G24350.1 syntaxin of plants 32; Swiss-Prot: sp|Q9LK09|SYP32_ARATH Syntaxin-32; TrEMBL-Plants: tr|I3SC69|I3SC69_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0390200 LjG1.1_chr1 87346342 87350752 -
2 domain predictions
2 GO terms
LotjaGi1g1v0390200.5
n.a. Syntaxin, putative; TAIR: AT3G24350.1 syntaxin of plants 32; Swiss-Prot: sp|Q9LK09|SYP32_ARATH Syntaxin-32; TrEMBL-Plants: tr|A0A0B2Q4J0|A0A0B2Q4J0_GLYSO Syntaxin-32; Found in the gene: LotjaGi1g1v0390200 LjG1.1_chr1 87353506 87357412 -
2 domain predictions
2 GO terms
LotjaGi1g1v0390200.6
n.a. Syntaxin, putative; TAIR: AT3G24350.1 syntaxin of plants 32; Swiss-Prot: sp|Q9LK09|SYP32_ARATH Syntaxin-32; TrEMBL-Plants: tr|I1K912|I1K912_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0390200 LjG1.1_chr1 87355049 87357412 -
2 domain predictions
2 GO terms