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Lj1g3v1782140.1

Overview

Field Value
Gene ID Lj1g3v1782140
Transcript ID Lj1g3v1782140.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: homeobox-leucine zipper protein HOX19-like [Glycine max] gi|356509807|ref|XP_003523637.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR24326:SF105
87 258 172 1.40E-73 –
PANTHER
PTHR24326
87 258 172 1.40E-73 –
SUPERFAMILY
SSF46689
130 192 63 1.58E-17
IPR009057
ProSiteProfiles
PS50071
131 191 61 17.151
IPR001356
SMART
SM00389
133 195 63 1.70E-15
IPR001356
CDD
cd00086
134 192 59 1.57E-14 –
Pfam
PF00046
135 189 55 7.20E-16
IPR001356
Gene3D
G3DSA:1.10.10.60
140 189 50 9.30E-17
IPR009057
ProSitePatterns
PS00027
166 189 24 –
IPR017970
Coils
Coil
190 227 38 – –
SMART
SM00340
191 238 48 9.50E-15
IPR003106
Pfam
PF02183
191 225 35 2.80E-07
IPR003106

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of
GO:0006355
Biological process Regulation of transcription, DNA-templated Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
Subterm of
Regulates
GO:0043565
Molecular function Sequence-specific DNA binding Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding.
Subterm of

Genome browser

LORE1 insertions 3

Expression data

Expression pattern

Expression pattern of Lj1g3v1782140.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj1g3v1782140.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.