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Lj1g3v1810070.1

Overview

Field	Value
Gene ID	Lj1g3v1810070
Transcript ID	Lj1g3v1810070.1
Related isoforms 1	Lj1g3v1810070.2
Lotus japonicus genome version	MG20 v3.0
Description	Kinase superfamily protein isoform 1 [Theobroma cacao] gi\|508782014\|gb\|EOY29270.1\|
Working Lj name	n.a.

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
Phobius	CYTOPLASMIC_DOMAIN View details on CYTOPLASMIC_DOMAIN Search for proteins/transripts with this domain	1	110	110	–	–
PANTHER	PTHR10566:SF70 View details on PTHR10566:SF70 Search for proteins/transripts with this domain View external data on PTHR10566:SF70	33	630	598	0	–
PANTHER	PTHR10566 View details on PTHR10566 Search for proteins/transripts with this domain View external data on PTHR10566	33	630	598	0	–
Phobius	TRANSMEMBRANE View details on TRANSMEMBRANE Search for proteins/transripts with this domain	111	131	21	–	–
Phobius	NON_CYTOPLASMIC_DOMAIN View details on NON_CYTOPLASMIC_DOMAIN Search for proteins/transripts with this domain	132	719	588	–	–
CDD	cd05121 View details on cd05121 Search for proteins/transripts with this domain View external data on cd05121	178	432	255	7.86E-88	–
SUPERFAMILY	SSF56112 View details on SSF56112 Search for proteins/transripts with this domain View external data on SSF56112	179	242	64	7.72E-23	IPR011009 Show description in modal box View details on IPR011009 Search for proteins/transripts with this domain View on EBI InterPro Service
Pfam	PF03109 View details on PF03109 Search for proteins/transripts with this domain View external data on PF03109	197	300	104	7.50E-28	IPR004147 Show description in modal box View details on IPR004147 Search for proteins/transripts with this domain View on EBI InterPro Service
SUPERFAMILY	SSF56112 View details on SSF56112 Search for proteins/transripts with this domain View external data on SSF56112	279	412	134	7.72E-23	IPR011009 Show description in modal box View details on IPR011009 Search for proteins/transripts with this domain View on EBI InterPro Service
Gene3D	G3DSA:3.90.1200.10 View details on G3DSA:3.90.1200.10 Search for proteins/transripts with this domain View external data on G3DSA:3.90.1200.10	353	411	59	6.60E-05	–

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

Unable to find any GO terms for the transcript with the identifier.

Genome browser

LORE1 insertions 20

Expression data

Expression pattern

Expression pattern of Lj1g3v1810070.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj1g3v1810070.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.