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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR004147
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We have found 76 results. Now displaying 1 of 2 with 50 rows per page. This search has taken 5.351s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0008959.1
n.a. PREDICTED: probable serine/threonine-protein kinase abkC-like [Cicer arietinum] gi|502077591|ref|XP_004485695.1| chr0 3639204 3643552 -
2 domain predictions
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Lj0g3v0078449.1
n.a. PREDICTED: chaperone activity of bc1 complex-like, mitochondrial-like [Glycine max] gi|356501819|ref|XP_003519721.1| chr0 30191349 30198459 +
2 domain predictions
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Lj0g3v0080109.2
n.a. Kinase superfamily protein isoform 1 [Theobroma cacao] gi|508728362|gb|EOY20259.1| chr0 31058585 31062425 -
2 domain predictions
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Lj0g3v0083779.1
n.a. ABC transporter-like protein [Medicago truncatula] gi|357519623|ref|XP_003630100.1| chr0 33297206 33308683 +
2 domain predictions
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Lj0g3v0083779.2
n.a. ABC transporter-like protein [Medicago truncatula] gi|357519623|ref|XP_003630100.1| chr0 33297206 33305330 +
2 domain predictions
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Lj0g3v0179039.1
n.a. PREDICTED: probable serine/threonine-protein kinase abkC-like [Glycine max] gi|356543148|ref|XP_003540025.1| chr0 86868357 86874184 +
2 domain predictions
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Lj0g3v0187099.1
n.a. ABC1 family protein [Theobroma cacao] gi|508781897|gb|EOY29153.1| chr0 91263299 91279079 -
2 domain predictions
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Lj0g3v0352229.1
n.a. Kinase superfamily protein [Theobroma cacao] gi|508725528|gb|EOY17425.1| chr0 185241789 185245833 +
2 domain predictions
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Lj1g3v0488990.1
n.a. protein kinase superfamily protein [Arabidopsis thaliana] gi|42562985|ref|NP_176770.2| chr1 6445817 6446338 +
2 domain predictions
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Lj1g3v1810070.1
n.a. Kinase superfamily protein isoform 1 [Theobroma cacao] gi|508782014|gb|EOY29270.1| chr1 21872153 21879542 -
2 domain predictions
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Lj1g3v1810070.2
n.a. protein kinase superfamily protein [Arabidopsis thaliana] gi|30689682|ref|NP_197879.2| chr1 21873387 21879542 -
2 domain predictions
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Lj2g3v2522110.2
n.a. ABC1 family protein [Arabidopsis lyrata subsp]. lyrata] gi|297841173|ref|XP_002888468.1| chr2 34942768 34951983 +
2 domain predictions
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Lj2g3v2522110.3
n.a. ABC1 family protein [Arabidopsis lyrata subsp]. lyrata] gi|297841173|ref|XP_002888468.1| chr2 34946141 34951983 +
2 domain predictions
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Lj3g3v1473560.1
n.a. ABC1 family protein [Arabidopsis lyrata subsp]. lyrata] gi|297842751|ref|XP_002889257.1| chr3 18709164 18713650 +
2 domain predictions
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Lj4g3v1141710.1
n.a. PREDICTED: probable serine/threonine-protein kinase abkC-like [Cicer arietinum] gi|502077591|ref|XP_004485695.1| chr4 17078950 17084169 +
2 domain predictions
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Lj4g3v1389170.1
n.a. PREDICTED: probable serine/threonine-protein kinase abkB-like [Glycine max] gi|356565264|ref|XP_003550862.1| chr4 21579718 21590275 -
2 domain predictions
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Lj4g3v1389170.2
n.a. PREDICTED: probable serine/threonine-protein kinase abkB-like [Glycine max] gi|356565264|ref|XP_003550862.1| chr4 21579718 21590275 -
2 domain predictions
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Lj4g3v2800420.1
n.a. ABC transporter-like protein [Medicago truncatula] gi|357519623|ref|XP_003630100.1| chr4 37452874 37462260 +
2 domain predictions
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Lj5g3v0586620.1
n.a. Kinase superfamily protein isoform 1 [Theobroma cacao] gi|508781937|gb|EOY29193.1| chr5 6882072 6890544 +
2 domain predictions
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Lj5g3v1827330.1
n.a. Kinase superfamily protein isoform 1 [Theobroma cacao] gi|508726715|gb|EOY18612.1| chr5 26187953 26198507 +
2 domain predictions
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Lj6g3v0122820.1
n.a. Kinase superfamily protein [Theobroma cacao] gi|508713461|gb|EOY05358.1| chr6 1457443 1466410 -
2 domain predictions
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Lj6g3v0214780.1
n.a. Kinase superfamily protein isoform 1 [Theobroma cacao] gi|508701636|gb|EOX93532.1| chr6 2182537 2193065 +
2 domain predictions
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Lj6g3v0522780.1
n.a. ABC transporter like protein [Medicago truncatula] gi|357461199|ref|XP_003600881.1| chr6 5148298 5155273 -
2 domain predictions
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LotjaGi1g1v0099400.1
n.a. Kinase superfamily protein, putative; TAIR: AT1G65950.1 Protein kinase superfamily protein; Swiss-Prot: sp|Q9D0L4|ADCK1_MOUSE Uncharacterized aarF domain-containing protein kinase 1; TrEMBL-Plants: tr|K7KAH0|K7KAH0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0099400 LjG1.1_chr1 15146611 15156166 -
2 domain predictions
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LotjaGi1g1v0118600.1
n.a. ABC1-like kinase; TAIR: AT1G79600.1 Protein kinase superfamily protein; Swiss-Prot: sp|Q9MA15|Y1796_ARATH Uncharacterized aarF domain-containing protein kinase At1g79600, chloroplastic; TrEMBL-Plants: tr|V7B4R4|V7B4R4_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0118600 LjG1.1_chr1 18722697 18730884 +
2 domain predictions
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LotjaGi1g1v0118600.2
n.a. ABC1-like kinase; TAIR: AT1G79600.1 Protein kinase superfamily protein; Swiss-Prot: sp|Q9MA15|Y1796_ARATH Uncharacterized aarF domain-containing protein kinase At1g79600, chloroplastic; TrEMBL-Plants: tr|V7B4R4|V7B4R4_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0118600 LjG1.1_chr1 18722807 18726830 +
2 domain predictions
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LotjaGi1g1v0118600.3
n.a. ABC1-like kinase; TAIR: AT1G79600.1 Protein kinase superfamily protein; Swiss-Prot: sp|Q9MA15|Y1796_ARATH Uncharacterized aarF domain-containing protein kinase At1g79600, chloroplastic; TrEMBL-Plants: tr|V7B4R4|V7B4R4_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0118600 LjG1.1_chr1 18722807 18729071 +
2 domain predictions
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LotjaGi1g1v0131100.1
n.a. ABC1 family kinase; TAIR: AT5G05200.1 Protein kinase superfamily protein; Swiss-Prot: sp|Q9ASX5|Y5520_ARATH Uncharacterized aarF domain-containing protein kinase At5g05200, chloroplastic; TrEMBL-Plants: tr|A0A151U063|A0A151U063_CAJCA Uncharacterized protein; Found in the gene: LotjaGi1g1v0131100 LjG1.1_chr1 21032653 21044283 -
2 domain predictions
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LotjaGi1g1v0131100.2
n.a. ABC1 family kinase; TAIR: AT5G05200.1 Protein kinase superfamily protein; Swiss-Prot: sp|Q9ASX5|Y5520_ARATH Uncharacterized aarF domain-containing protein kinase At5g05200, chloroplastic; TrEMBL-Plants: tr|A0A151U063|A0A151U063_CAJCA Uncharacterized protein; Found in the gene: LotjaGi1g1v0131100 LjG1.1_chr1 21038526 21044269 -
2 domain predictions
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LotjaGi1g1v0131100.3
n.a. ABC1 family kinase; TAIR: AT5G05200.1 Protein kinase superfamily protein; Swiss-Prot: sp|Q9ASX5|Y5520_ARATH Uncharacterized aarF domain-containing protein kinase At5g05200, chloroplastic; TrEMBL-Plants: tr|A0A151U063|A0A151U063_CAJCA Uncharacterized protein; Found in the gene: LotjaGi1g1v0131100 LjG1.1_chr1 21039269 21044136 -
2 domain predictions
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LotjaGi1g1v0198800.1
n.a. ABC1 protein kinase; TAIR: AT5G24810.1 ABC1 family protein; Swiss-Prot: sp|P73627|Y1770_SYNY3 Uncharacterized protein sll1770; TrEMBL-Plants: tr|A0A0S3RN26|A0A0S3RN26_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0198800 LjG1.1_chr1 41844277 41873702 +
2 domain predictions
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LotjaGi1g1v0198800.2
n.a. ABC1 protein kinase; TAIR: AT5G24810.1 ABC1 family protein; Swiss-Prot: sp|P73627|Y1770_SYNY3 Uncharacterized protein sll1770; TrEMBL-Plants: tr|A0A0S3RN26|A0A0S3RN26_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0198800 LjG1.1_chr1 41847507 41873193 +
2 domain predictions
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LotjaGi1g1v0198800.3
n.a. ABC1 protein kinase; TAIR: AT5G24810.1 ABC1 family protein; Swiss-Prot: sp|P73627|Y1770_SYNY3 Uncharacterized protein sll1770; TrEMBL-Plants: tr|A0A0S3RN26|A0A0S3RN26_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0198800 LjG1.1_chr1 41847762 41873193 +
2 domain predictions
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LotjaGi1g1v0198800.5
n.a. ABC1 protein kinase; TAIR: AT5G24810.1 ABC1 family protein; Swiss-Prot: sp|P73627|Y1770_SYNY3 Uncharacterized protein sll1770; TrEMBL-Plants: tr|A0A0S3RN26|A0A0S3RN26_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0198800 LjG1.1_chr1 41847809 41873193 +
2 domain predictions
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LotjaGi1g1v0310300.1
n.a. Protein kinase family protein; TAIR: AT5G64940.1 ABC2 homolog 13; Swiss-Prot: sp|P73627|Y1770_SYNY3 Uncharacterized protein sll1770; TrEMBL-Plants: tr|G7JA88|G7JA88_MEDTR ABC transporter-like protein; Found in the gene: LotjaGi1g1v0310300 LjG1.1_chr1 75356993 75368676 -
2 domain predictions
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LotjaGi1g1v0310300.2
n.a. Protein kinase family protein; TAIR: AT5G64940.1 ABC2 homolog 13; Swiss-Prot: sp|P73627|Y1770_SYNY3 Uncharacterized protein sll1770; TrEMBL-Plants: tr|A0A0R0KKC6|A0A0R0KKC6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0310300 LjG1.1_chr1 75359967 75368490 -
2 domain predictions
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LotjaGi1g1v0310300.3
n.a. Protein kinase family protein; TAIR: AT5G64940.1 ABC2 homolog 13; Swiss-Prot: sp|P73627|Y1770_SYNY3 Uncharacterized protein sll1770; TrEMBL-Plants: tr|G7JA88|G7JA88_MEDTR ABC transporter-like protein; Found in the gene: LotjaGi1g1v0310300 LjG1.1_chr1 75359967 75368490 -
2 domain predictions
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LotjaGi1g1v0310300.4
n.a. Protein kinase family protein; TAIR: AT5G64940.1 ABC2 homolog 13; Swiss-Prot: sp|P73627|Y1770_SYNY3 Uncharacterized protein sll1770; TrEMBL-Plants: tr|G7JA88|G7JA88_MEDTR ABC transporter-like protein; Found in the gene: LotjaGi1g1v0310300 LjG1.1_chr1 75359967 75368493 -
2 domain predictions
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LotjaGi1g1v0375300.1
n.a. ABC1-like kinase; TAIR: AT5G24970.1 Protein kinase superfamily protein; Swiss-Prot: sp|Q9MA15|Y1796_ARATH Uncharacterized aarF domain-containing protein kinase At1g79600, chloroplastic; TrEMBL-Plants: tr|I1JU46|I1JU46_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0375300 LjG1.1_chr1 85356535 85364713 -
2 domain predictions
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LotjaGi1g1v0375300.2
n.a. ABC1-like kinase; TAIR: AT5G24970.3 Protein kinase superfamily protein; Swiss-Prot: sp|Q55680|Y005_SYNY3 Uncharacterized protein sll0005; TrEMBL-Plants: tr|I1JU46|I1JU46_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0375300 LjG1.1_chr1 85357327 85364676 -
2 domain predictions
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LotjaGi1g1v0375300.3
n.a. ABC1-like kinase; TAIR: AT5G24970.1 Protein kinase superfamily protein; Swiss-Prot: sp|Q9MA15|Y1796_ARATH Uncharacterized aarF domain-containing protein kinase At1g79600, chloroplastic; TrEMBL-Plants: tr|I1JU46|I1JU46_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0375300 LjG1.1_chr1 85357353 85364685 -
2 domain predictions
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LotjaGi1g1v0375300.4
n.a. ABC1-like kinase; TAIR: AT5G24970.1 Protein kinase superfamily protein; Swiss-Prot: sp|Q9MA15|Y1796_ARATH Uncharacterized aarF domain-containing protein kinase At1g79600, chloroplastic; TrEMBL-Plants: tr|I1JU46|I1JU46_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0375300 LjG1.1_chr1 85357404 85364337 -
2 domain predictions
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LotjaGi2g1v0119300.2
n.a. Protein kinase family protein; TAIR: AT1G71810.1 Protein kinase superfamily protein; Swiss-Prot: sp|Q94BU1|Y1181_ARATH Uncharacterized aarF domain-containing protein kinase At1g71810, chloroplastic; TrEMBL-Plants: tr|A0A0S3T9E3|A0A0S3T9E3_PHAAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0119300 LjG1.1_chr2 43580603 43610517 -
2 domain predictions
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LotjaGi3g1v0206700.1
n.a. ABC1-like kinase; TAIR: AT1G79600.1 Protein kinase superfamily protein; Swiss-Prot: sp|Q9MA15|Y1796_ARATH Uncharacterized aarF domain-containing protein kinase At1g79600, chloroplastic; TrEMBL-Plants: tr|G7JFX0|G7JFX0_MEDTR Ubiquinone biosynthesis protein UbiB; Found in the gene: LotjaGi3g1v0206700 LjG1.1_chr3 30372311 30380270 +
2 domain predictions
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LotjaGi3g1v0325700.1
n.a. Protein kinase-like; TAIR: AT1G11390.1 Protein kinase superfamily protein; Swiss-Prot: sp|Q55G83|ABKC_DICDI Probable serine/threonine-protein kinase abkC; TrEMBL-Plants: tr|I1LSK9|I1LSK9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0325700 LjG1.1_chr3 69318058 69324188 +
2 domain predictions
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LotjaGi4g1v0189500.1
n.a. Protein kinase-like; TAIR: AT1G11390.1 Protein kinase superfamily protein; Swiss-Prot: sp|Q02981|YP109_YEAST ABC1 family protein YPL109C, mitochondrial; TrEMBL-Plants: tr|V7BT81|V7BT81_PHAVU Uncharacterized protein; Found in the gene: LotjaGi4g1v0189500 LjG1.1_chr4 43359017 43364449 +
2 domain predictions
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LotjaGi4g1v0189500.2
n.a. Protein kinase-like; TAIR: AT1G11390.1 Protein kinase superfamily protein; Swiss-Prot: sp|Q02981|YP109_YEAST ABC1 family protein YPL109C, mitochondrial; TrEMBL-Plants: tr|V7BT81|V7BT81_PHAVU Uncharacterized protein; Found in the gene: LotjaGi4g1v0189500 LjG1.1_chr4 43360347 43364092 +
2 domain predictions
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LotjaGi4g1v0224300.1
n.a. Protein kinase family protein; TAIR: AT4G24810.2 Protein kinase superfamily protein; Swiss-Prot: sp|Q54TR5|ABKB_DICDI Probable serine/threonine-protein kinase abkB; TrEMBL-Plants: tr|K7KMV1|K7KMV1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0224300 LjG1.1_chr4 53000306 53011411 -
2 domain predictions
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LotjaGi4g1v0224300.2
n.a. Protein kinase superfamily protein; TAIR: AT4G24810.2 Protein kinase superfamily protein; Swiss-Prot: sp|Q6INL7|ADCK1_XENLA Uncharacterized aarF domain-containing protein kinase 1; TrEMBL-Plants: tr|A0A151TE72|A0A151TE72_CAJCA Putative aarF domain-containing protein kinase 1; Found in the gene: LotjaGi4g1v0224300 LjG1.1_chr4 53001278 53011077 -
2 domain predictions
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LotjaGi4g1v0224300.3
n.a. Protein kinase family protein; TAIR: AT4G24810.2 Protein kinase superfamily protein; Swiss-Prot: sp|Q5ZMT7|ADCK1_CHICK Uncharacterized aarF domain-containing protein kinase 1; TrEMBL-Plants: tr|I1K079|I1K079_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0224300 LjG1.1_chr4 53002322 53011086 -
2 domain predictions
 –