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Lj1g3v1911750.1

Overview

Field Value
Gene ID Lj1g3v1911750
Transcript ID Lj1g3v1911750.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: DEAD-box ATP-dependent RNA helicase 56-like [Glycine max] gi|356507736|ref|XP_003522620.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR24031
1 424 424 0 –
PANTHER
PTHR24031:SF246
1 424 424 0 –
Gene3D
G3DSA:3.40.50.300
35 254 220 6.30E-74
IPR027417
ProSiteProfiles
PS51195
46 74 29 9.665
IPR014014
CDD
cd00268
48 250 203 5.14E-85 –
SMART
SM00487
65 266 202 4.40E-54
IPR014001
Pfam
PF00270
71 236 166 1.60E-37
IPR011545
ProSiteProfiles
PS51192
77 250 174 25.284
IPR014001
SUPERFAMILY
SSF52540
115 394 280 3.23E-68
IPR027417
Gene3D
G3DSA:3.40.50.300
258 420 163 2.30E-49
IPR027417
ProSiteProfiles
PS51194
262 423 162 22.186
IPR001650
CDD
cd00079
264 391 128 3.15E-38 –
Pfam
PF00271
276 383 108 6.80E-28
IPR001650
SMART
SM00490
302 383 82 4.40E-31
IPR001650

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003676
Molecular function Nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
Subterm of
GO:0005524
Molecular function ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
Subterm of

Genome browser

LORE1 insertions 2

Expression data

Expression pattern

Expression pattern of Lj1g3v1911750.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj1g3v1911750.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.