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Lj1g3v1931370.1

Overview

Field Value
Gene ID Lj1g3v1931370
Transcript ID Lj1g3v1931370.1
Lotus japonicus genome version MG20 v3.0
Description Transcription elongation factor A protein [Medicago truncatula] gi|357466369|ref|XP_003603469.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
25 315 291 – –
Gene3D
G3DSA:1.10.472.30
192 225 34 3.90E-38
IPR003618
ProSiteProfiles
PS51321
376 499 124 29.84
IPR003618
MobiDBLite
mobidb-lite
384 403 20 – –
SMART
SM00510
388 482 95 6.20E-30
IPR003618
Gene3D
G3DSA:1.10.472.30
402 475 74 3.90E-38
IPR003618
SUPERFAMILY
SSF46942
407 475 69 9.02E-25
IPR003618
Pfam
PF07500
407 486 80 4.50E-26
IPR003618
PANTHER
PTHR11477:SF17
408 540 133 1.00E-174 –
PANTHER
PTHR11477
408 540 133 1.00E-174 –
MobiDBLite
mobidb-lite
559 596 38 – –
PANTHER
PTHR11477
563 697 135 1.00E-174 –
PANTHER
PTHR11477:SF17
563 697 135 1.00E-174 –
MobiDBLite
mobidb-lite
617 722 106 – –
PANTHER
PTHR11477:SF17
731 1143 413 1.00E-174 –
PANTHER
PTHR11477
731 1143 413 1.00E-174 –
Pfam
PF07744
750 892 143 4.60E-19
IPR012921
MobiDBLite
mobidb-lite
900 992 93 – –
MobiDBLite
mobidb-lite
1106 1144 39 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0006351
Biological process Transcription, DNA-templated The cellular synthesis of RNA on a template of DNA.
Subterm of
Part of

Genome browser

LORE1 insertions 6

Expression data

Expression pattern

Expression pattern of Lj1g3v1931370.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj1g3v1931370.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.