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Lj1g3v1965100.1

Overview

Field Value
Gene ID Lj1g3v1965100
Transcript ID Lj1g3v1965100.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: eukaryotic translation initiation factor 1A-like [Cicer arietinum] gi|502084002|ref|XP_004487629.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
SUPERFAMILY
SSF50249
1 95 95 3.14E-28
IPR012340
ProSiteProfiles
PS50832
1 47 47 22.581
IPR006196
SMART
SM00652
1 61 61 1.30E-23
IPR001253
PANTHER
PTHR21668
1 96 96 4.60E-66
IPR001253
CDD
cd05793
1 60 60 2.58E-31 –
Gene3D
G3DSA:2.40.50.140
1 95 95 3.50E-37 –
PANTHER
PTHR21668:SF5
1 96 96 4.60E-66 –
Pfam
PF01176
2 44 43 9.70E-15
IPR006196
ProDom
PD005579
4 60 57 3.00E-25
IPR001253
MobiDBLite
mobidb-lite
67 96 30 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003723
Molecular function RNA binding Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
Subterm of
GO:0003743
Molecular function Translation initiation factor activity Functions in the initiation of ribosome-mediated translation of mRNA into a polypeptide.
Subterm of
GO:0006413
Biological process Translational initiation The process preceding formation of the peptide bond between the first two amino acids of a protein. This includes the formation of a complex of the ribosome, mRNA or circRNA, and an initiation complex that contains the first aminoacyl-tRNA.
Subterm of
Part of

Genome browser

LORE1 insertions 2

Expression data

Expression pattern

Expression pattern of Lj1g3v1965100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj1g3v1965100.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.