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| Field | Value |
|---|---|
| Gene ID | Lj1g3v1991500 |
| Transcript ID | Lj1g3v1991500.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: probable cyclic nucleotide-gated ion channel 14-like [Glycine max] gi|356518292|ref|XP_003527813.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 273 | 273 | 8.00E-304 | – | |
| PANTHER | 1 | 273 | 273 | 8.00E-304 | – | |
| Phobius | 1 | 82 | 82 | – | – | |
| SUPERFAMILY | 72 | 273 | 202 | 4.97E-30 | – | |
| Pfam | 80 | 406 | 327 | 1.50E-28 | ||
| TMHMM | 83 | 102 | 20 | – | – | |
| Phobius | 83 | 105 | 23 | – | – | |
| Phobius | 106 | 116 | 11 | – | – | |
| TMHMM | 117 | 136 | 20 | – | – | |
| Phobius | 117 | 136 | 20 | – | – | |
| Gene3D | 122 | 274 | 153 | 3.70E-15 | – | |
| Phobius | 137 | 174 | 38 | – | – | |
| PRINTS | 138 | 147 | 10 | 2.60E-07 | ||
| Phobius | 175 | 197 | 23 | – | – | |
| TMHMM | 175 | 197 | 23 | – | – | |
| Phobius | 198 | 208 | 11 | – | – | |
| Phobius | 209 | 226 | 18 | – | – | |
| Phobius | 227 | 246 | 20 | – | – | |
| TMHMM | 246 | 268 | 23 | – | – | |
| Phobius | 247 | 268 | 22 | – | – | |
| Phobius | 269 | 370 | 102 | – | – | |
| PANTHER | 322 | 493 | 172 | 8.00E-304 | – | |
| PANTHER | 322 | 493 | 172 | 8.00E-304 | – | |
| TMHMM | 334 | 356 | 23 | – | – | |
| Gene3D | 341 | 401 | 61 | 3.70E-15 | – | |
| SUPERFAMILY | 341 | 401 | 61 | 4.97E-30 | – | |
| PRINTS | 348 | 365 | 18 | 2.60E-07 | ||
| TMHMM | 371 | 393 | 23 | – | – | |
| Phobius | 371 | 393 | 23 | – | – | |
| PRINTS | 374 | 385 | 12 | 2.60E-07 | ||
| PRINTS | 392 | 401 | 10 | 2.60E-07 | ||
| Phobius | 394 | 493 | 100 | – | – | |
| Gene3D | 402 | 470 | 69 | 6.40E-14 | – | |
| SUPERFAMILY | 409 | 492 | 84 | 2.77E-17 | ||
| PRINTS | 442 | 449 | 8 | 2.60E-07 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Ion channel activity | Enables the facilitated diffusion of an ion (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism. May be either selective (it enables passage of a specific ion only) or non-selective (it enables passage of two or more ions of same charge but different size). | ||
| Molecular function | Voltage-gated potassium channel activity | Enables the transmembrane transfer of a potassium ion by a voltage-gated channel. A voltage-gated channel is a channel whose open state is dependent on the voltage across the membrane in which it is embedded. | ||
| Biological process | Ion transport | The directed movement of charged atoms or small charged molecules into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. | ||
| Biological process | Potassium ion transport | The directed movement of potassium ions (K+) into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. | ||
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of Lj1g3v1991500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj1g3v1991500.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.