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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR003938
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We have found 41 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 8.288s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0103009.2
n.a. CNGC5-like protein [Medicago truncatula] gi|357472163|ref|XP_003606366.1| chr0 43876688 43880965 +
2 domain predictions
3 GO terms
Lj0g3v0183609.1
n.a. PREDICTED: potassium channel KAT1-like [Glycine max] gi|356523521|ref|XP_003530386.1| chr0 89197053 89206682 +
2 domain predictions
3 GO terms
Lj1g3v1913910.1
n.a. PREDICTED: potassium channel AKT1-like [Glycine max] gi|356515474|ref|XP_003526425.1| chr1 22755657 22772854 -
2 domain predictions
3 GO terms
Lj1g3v1932790.1
n.a. Potassium channel [Medicago truncatula] gi|357466431|ref|XP_003603500.1| chr1 23120386 23125730 -
2 domain predictions
3 GO terms
Lj1g3v1991500.1
n.a. PREDICTED: probable cyclic nucleotide-gated ion channel 14-like [Glycine max] gi|356518292|ref|XP_003527813.1| chr1 23403163 23407230 +
2 domain predictions
3 GO terms
Lj1g3v2071040.1
n.a. PREDICTED: potassium channel KAT1-like [Cicer arietinum] gi|502158392|ref|XP_004511133.1| chr1 24579311 24583533 +
2 domain predictions
3 GO terms
Lj2g3v2541790.1
n.a. PREDICTED: potassium channel SKOR-like [Glycine max] gi|356552003|ref|XP_003544361.1| chr2 35151176 35162227 -
2 domain predictions
3 GO terms
Lj3g3v1089390.3
n.a. Cyclic nucleotide-gated channel 15 [Theobroma cacao] gi|508787143|gb|EOY34399.1| chr3 14607579 14612374 -
2 domain predictions
3 GO terms
Lj4g3v1823550.2
n.a. PREDICTED: potassium channel AKT1-like [Glycine max] gi|356511634|ref|XP_003524528.1| chr4 25568120 25574906 -
2 domain predictions
3 GO terms
Lj4g3v1983600.1
n.a. PREDICTED: probable cyclic nucleotide-gated ion channel 5-like isoform X1 [Cicer arietinum] gi|502149997|ref|XP_004507740.1| chr4 27637804 27646676 -
2 domain predictions
3 GO terms
Lj6g3v1049130.1
n.a. PREDICTED: probable cyclic nucleotide-gated ion channel 17-like [Glycine max] gi|356508396|ref|XP_003522943.1| chr6 11932547 11941160 -
2 domain predictions
3 GO terms
Lj6g3v1077850.1
n.a. PREDICTED: probable cyclic nucleotide-gated ion channel 5-like [Glycine max] gi|356543300|ref|XP_003540100.1| chr6 12639111 12644707 +
2 domain predictions
3 GO terms
Lj6g3v1077850.2
n.a. PREDICTED: probable cyclic nucleotide-gated ion channel 5-like [Glycine max] gi|356543300|ref|XP_003540100.1| chr6 12639111 12644707 +
2 domain predictions
3 GO terms
Lj6g3v1934080.1
n.a. PREDICTED: potassium channel KAT1-like isoform X3 [Cicer arietinum] gi|502078700|ref|XP_004486028.1| chr6 22036446 22039527 +
2 domain predictions
3 GO terms
Lj6g3v2274490.1
n.a. Potassium channel [Medicago truncatula] gi|357445481|ref|XP_003593018.1| chr6 26475069 26482462 +
2 domain predictions
3 GO terms
Lj6g3v2274590.1
n.a. PREDICTED: LOW QUALITY PROTEIN: potassium channel AKT2/3-like [Cicer arietinum] gi|502076890|ref|XP_004485488.1| chr6 26507978 26511739 +
2 domain predictions
3 GO terms
LotjaGi1g1v0096100.1
n.a. Potassium channel; TAIR: AT3G02850.1 STELAR K+ outward rectifier; Swiss-Prot: sp|Q9M8S6|SKOR_ARATH Potassium channel SKOR; TrEMBL-Plants: tr|I1MBT8|I1MBT8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0096100 LjG1.1_chr1 14566954 14578142 +
2 domain predictions
3 GO terms
LotjaGi1g1v0096100.2
n.a. Potassium channel; TAIR: AT3G02850.1 STELAR K+ outward rectifier; Swiss-Prot: sp|Q9M8S6|SKOR_ARATH Potassium channel SKOR; TrEMBL-Plants: tr|I1MBT8|I1MBT8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0096100 LjG1.1_chr1 14571761 14577342 +
2 domain predictions
3 GO terms
LotjaGi1g1v0387000.1
n.a. Potassium channel; TAIR: AT2G26650.1 K+ transporter 1; Swiss-Prot: sp|Q38998|AKT1_ARATH Potassium channel AKT1; TrEMBL-Plants: tr|K7KIL1|K7KIL1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0387000 LjG1.1_chr1 87027876 87035600 -
2 domain predictions
3 GO terms
LotjaGi1g1v0390800.1
n.a. Potassium channel; TAIR: AT4G32650.1 potassium channel protein; Swiss-Prot: sp|P92960|KAT3_ARATH Potassium channel KAT3; TrEMBL-Plants: tr|G7JC98|G7JC98_MEDTR Potassium channel KAT3 protein; Found in the gene: LotjaGi1g1v0390800 LjG1.1_chr1 87457680 87464882 -
2 domain predictions
3 GO terms
LotjaGi1g1v0396000.1
n.a. Cyclic nucleotide-gated channel; TAIR: AT2G24610.1 cyclic nucleotide-gated channel 14; Swiss-Prot: sp|Q9SJA4|CNG14_ARATH Probable cyclic nucleotide-gated ion channel 14; TrEMBL-Plants: tr|V7AWW4|V7AWW4_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0396000 LjG1.1_chr1 88214924 88224569 +
2 domain predictions
3 GO terms
LotjaGi2g1v0358400.1
n.a. Cyclic nucleotide-gated channel; TAIR: AT2G28260.1 cyclic nucleotide-gated channel 15; Swiss-Prot: sp|A0A072VMJ3|CN15C_MEDTR Protein CNGC15c; TrEMBL-Plants: tr|V7AJJ6|V7AJJ6_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0358400 LjG1.1_chr2 85548867 85555320 +
2 domain predictions
3 GO terms
LotjaGi3g1v0164800.2
n.a. Cyclic nucleotide-gated channel; TAIR: AT2G28260.1 cyclic nucleotide-gated channel 15; Swiss-Prot: sp|A0A072VMJ3|CN15C_MEDTR Protein CNGC15c; TrEMBL-Plants: tr|A0A0S3SGM8|A0A0S3SGM8_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0164800 LjG1.1_chr3 22441085 22446570 -
2 domain predictions
3 GO terms
LotjaGi3g1v0164800.4
n.a. Cyclic nucleotide-gated channel; TAIR: AT2G28260.1 cyclic nucleotide-gated channel 15; Swiss-Prot: sp|A0A072VMJ3|CN15C_MEDTR Protein CNGC15c; TrEMBL-Plants: tr|A0A0S3SGM8|A0A0S3SGM8_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0164800 LjG1.1_chr3 22441777 22445340 -
2 domain predictions
3 GO terms
LotjaGi3g1v0164800.6
n.a. Cyclic nucleotide-gated channel; TAIR: AT2G28260.1 cyclic nucleotide-gated channel 15; Swiss-Prot: sp|A0A072VMJ3|CN15C_MEDTR Protein CNGC15c; TrEMBL-Plants: tr|K7M362|K7M362_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0164800 LjG1.1_chr3 22441777 22445360 -
2 domain predictions
3 GO terms
LotjaGi3g1v0348800.1
n.a. Cyclic nucleotide-gated channel; TAIR: AT1G19780.1 cyclic nucleotide gated channel 8; Swiss-Prot: sp|Q9FXH6|CNGC8_ARATH Putative cyclic nucleotide-gated ion channel 8; TrEMBL-Plants: tr|A0A1J7HGH8|A0A1J7HGH8_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0348800 LjG1.1_chr3 72675149 72684094 +
2 domain predictions
3 GO terms
LotjaGi3g1v0348800.2
n.a. Cyclic nucleotide-gated channel; TAIR: AT1G19780.1 cyclic nucleotide gated channel 8; Swiss-Prot: sp|Q9FXH6|CNGC8_ARATH Putative cyclic nucleotide-gated ion channel 8; TrEMBL-Plants: tr|A0A1J7HGH8|A0A1J7HGH8_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0348800 LjG1.1_chr3 72675759 72680772 +
2 domain predictions
3 GO terms
LotjaGi4g1v0266600.2
n.a. Potassium channel; TAIR: AT2G26650.1 K+ transporter 1; Swiss-Prot: sp|Q38998|AKT1_ARATH Potassium channel AKT1; TrEMBL-Plants: tr|G7JV81|G7JV81_MEDTR Inwardly rectifying potassium channel subunit; Found in the gene: LotjaGi4g1v0266600 LjG1.1_chr4 63143089 63150585 -
2 domain predictions
3 GO terms
LotjaGi5g1v0061400.1
n.a. Potassium channel; TAIR: AT2G26650.1 K+ transporter 1; Swiss-Prot: sp|Q38998|AKT1_ARATH Potassium channel AKT1; TrEMBL-Plants: tr|I1M9L1|I1M9L1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0061400 LjG1.1_chr5 10269430 10276923 +
2 domain predictions
3 GO terms
LotjaGi5g1v0079200.1
n.a. Cyclic nucleotide-gated channel; TAIR: AT2G28260.1 cyclic nucleotide-gated channel 15; Swiss-Prot: sp|G7IBJ4|CN15A_MEDTR Protein CNGC15a; TrEMBL-Plants: tr|K7LHL8|K7LHL8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0079200 LjG1.1_chr5 12901033 12907731 -
2 domain predictions
3 GO terms
LotjaGi5g1v0079200.2
n.a. Cyclic nucleotide-gated channel; TAIR: AT2G28260.1 cyclic nucleotide-gated channel 15; Swiss-Prot: sp|G7IBJ4|CN15A_MEDTR Protein CNGC15a; TrEMBL-Plants: tr|K7LHL8|K7LHL8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0079200 LjG1.1_chr5 12901467 12906448 -
2 domain predictions
3 GO terms
LotjaGi5g1v0118700.1
n.a. Potassium channel; TAIR: AT5G46240.1 potassium channel protein (KAT1); Swiss-Prot: sp|Q39128|KAT1_ARATH Potassium channel KAT1; TrEMBL-Plants: tr|I1KW21|I1KW21_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0118700 LjG1.1_chr5 24844206 24852496 +
2 domain predictions
3 GO terms
LotjaGi6g1v0198300.1
n.a. Cyclic nucleotide-gated channel; TAIR: AT4G30360.1 cyclic nucleotide-gated channel 17; Swiss-Prot: sp|Q8L7Z0|CNG17_ARATH Cyclic nucleotide-gated ion channel 17; TrEMBL-Plants: tr|A0A0S3RGT1|A0A0S3RGT1_PHAAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0198300 LjG1.1_chr6 49485578 49498673 +
2 domain predictions
3 GO terms
LotjaGi6g1v0198300.2
n.a. Cyclic nucleotide-gated channel; TAIR: AT4G30360.1 cyclic nucleotide-gated channel 17; Swiss-Prot: sp|Q8L7Z0|CNG17_ARATH Cyclic nucleotide-gated ion channel 17; TrEMBL-Plants: tr|A0A0R0K8S8|A0A0R0K8S8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0198300 LjG1.1_chr6 49486290 49494443 +
2 domain predictions
3 GO terms
LotjaGi6g1v0198300.4
n.a. Cyclic nucleotide-gated channel; TAIR: AT4G30360.1 cyclic nucleotide-gated channel 17; Swiss-Prot: sp|Q8L7Z0|CNG17_ARATH Cyclic nucleotide-gated ion channel 17; TrEMBL-Plants: tr|A0A151R9M7|A0A151R9M7_CAJCA Putative cyclic nucleotide-gated ion channel 17; Found in the gene: LotjaGi6g1v0198300 LjG1.1_chr6 49486290 49494443 +
2 domain predictions
3 GO terms
LotjaGi6g1v0198300.5
n.a. Cyclic nucleotide-gated channel; TAIR: AT4G30360.1 cyclic nucleotide-gated channel 17; Swiss-Prot: sp|Q8L7Z0|CNG17_ARATH Cyclic nucleotide-gated ion channel 17; TrEMBL-Plants: tr|I1JWE5|I1JWE5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0198300 LjG1.1_chr6 49486290 49494443 +
2 domain predictions
3 GO terms
LotjaGi6g1v0308700.1
n.a. Potassium channel; TAIR: AT5G46240.1 potassium channel protein (KAT1); Swiss-Prot: sp|Q39128|KAT1_ARATH Potassium channel KAT1; TrEMBL-Plants: tr|A0A0K0TQ50|A0A0K0TQ50_9FABA KAT1-type channel; Found in the gene: LotjaGi6g1v0308700 LjG1.1_chr6 62609872 62618789 +
2 domain predictions
3 GO terms
LotjaGi6g1v0361000.1
n.a. Potassium channel; TAIR: AT4G22200.1 potassium transport 2/3; Swiss-Prot: sp|Q38898|AKT2_ARATH Potassium channel AKT2/3; TrEMBL-Plants: tr|A0A151T7Z2|A0A151T7Z2_CAJCA Potassium channel AKT2/3; Found in the gene: LotjaGi6g1v0361000 LjG1.1_chr6 67295568 67303321 +
2 domain predictions
3 GO terms
LotjaGi6g1v0361000.2
n.a. Potassium channel; TAIR: AT4G22200.1 potassium transport 2/3; Swiss-Prot: sp|Q38898|AKT2_ARATH Potassium channel AKT2/3; TrEMBL-Plants: tr|G7IPF9|G7IPF9_MEDTR Potassium outward rectifying channel protein; Found in the gene: LotjaGi6g1v0361000 LjG1.1_chr6 67296423 67302937 +
2 domain predictions
3 GO terms
LotjaGi6g1v0361000.3
n.a. Potassium channel; TAIR: AT4G22200.1 potassium transport 2/3; Swiss-Prot: sp|Q38898|AKT2_ARATH Potassium channel AKT2/3; TrEMBL-Plants: tr|G7IPF9|G7IPF9_MEDTR Potassium outward rectifying channel protein; Found in the gene: LotjaGi6g1v0361000 LjG1.1_chr6 67298487 67302929 +
2 domain predictions
3 GO terms
LotjaGi6g1v0361300.1
n.a. Potassium channel; TAIR: AT4G22200.1 potassium transport 2/3; Swiss-Prot: sp|Q38898|AKT2_ARATH Potassium channel AKT2/3; TrEMBL-Plants: tr|G7IPF9|G7IPF9_MEDTR Potassium outward rectifying channel protein; Found in the gene: LotjaGi6g1v0361300 LjG1.1_chr6 67328654 67335839 +
2 domain predictions
3 GO terms