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Lj1g3v2001850.2

Overview

Field Value
Gene ID Lj1g3v2001850
Transcript ID Lj1g3v2001850.2
Related isoforms 1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: proteasome subunit beta type-6-like [Glycine max] gi|356507848|ref|XP_003522675.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR11599
1 221 221 1.50E-122 –
PANTHER
PTHR11599:SF4
1 221 221 1.50E-122 –
SUPERFAMILY
SSF56235
8 204 197 3.66E-59
IPR029055
Pfam
PF00227
13 192 180 5.90E-46
IPR001353
ProSiteProfiles
PS51476
14 193 180 47.234
IPR023333
Gene3D
G3DSA:3.60.20.10
15 218 204 1.10E-70
IPR029055
CDD
cd03762
15 202 188 1.87E-117 –
ProSitePatterns
PS00854
18 65 48 –
IPR016050
PRINTS
PR00141
22 37 16 7.90E-20
IPR000243
PRINTS
PR00141
143 154 12 7.90E-20
IPR000243
PRINTS
PR00141
154 165 12 7.90E-20
IPR000243
PRINTS
PR00141
179 190 12 7.90E-20
IPR000243

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0004175
Molecular function Endopeptidase activity Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain.
Subterm of
GO:0004298
Molecular function Threonine-type endopeptidase activity Catalysis of the hydrolysis of internal peptide bonds in a polypeptide chain by a mechanism in which the hydroxyl group of a threonine residue at the active center acts as a nucleophile.
Subterm of
GO:0005839
Cellular component Proteasome core complex A multisubunit barrel shaped endoprotease complex, which is the core of the proteasome complex.
Subterm of
Part of
GO:0051603
Biological process Proteolysis involved in cellular protein catabolic process The hydrolysis of a peptide bond or bonds within a protein as part of the chemical reactions and pathways resulting in the breakdown of a protein by individual cells.
Subterm of
Part of

Genome browser

LORE1 insertions 1

Expression data

Expression pattern

Expression pattern of Lj1g3v2001850.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj1g3v2001850.2, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.