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Lj1g3v2013000.1

Overview

Field Value
Gene ID Lj1g3v2013000
Transcript ID Lj1g3v2013000.1
Lotus japonicus genome version MG20 v3.0
Description NBS-LRR resistance protein [Medicago truncatula] gi|357498303|ref|XP_003619440.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR23155
1 515 515 1.30E-171 –
PANTHER
PTHR23155:SF505
1 515 515 1.30E-171 –
SUPERFAMILY
SSF52540
4 192 189 5.90E-38
IPR027417
Gene3D
G3DSA:3.40.50.300
10 111 102 1.10E-04
IPR027417
Pfam
PF00931
20 218 199 6.50E-39
IPR002182
PRINTS
PR00364
32 46 15 3.50E-10 –
PRINTS
PR00364
130 144 15 3.50E-10 –
SUPERFAMILY
SSF52058
255 446 192 4.42E-21
IPR032675
Gene3D
G3DSA:3.80.10.10
321 429 109 9.00E-13
IPR032675
PRINTS
PR00364
371 387 17 3.50E-10 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0043531
Molecular function ADP binding Interacting selectively and non-covalently with ADP, adenosine 5'-diphosphate.
Subterm of

Genome browser

LORE1 insertions 17

Expression data

Expression pattern

Expression pattern of Lj1g3v2013000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj1g3v2013000.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.