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Lj1g3v2050880.1

Overview

Field Value
Gene ID Lj1g3v2050880
Transcript ID Lj1g3v2050880.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: lupus La protein homolog A-like [Glycine max] gi|356515577|ref|XP_003526475.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
SUPERFAMILY
SSF46785
4 106 103 7.16E-21
IPR011991
ProSiteProfiles
PS50961
5 108 104 23.957
IPR006630
Gene3D
G3DSA:1.10.10.10
6 104 99 1.00E-29
IPR011991
PANTHER
PTHR22792
7 212 206 5.20E-192 –
PANTHER
PTHR22792:SF64
7 212 206 5.20E-192 –
SMART
SM00715
9 101 93 5.40E-36
IPR006630
CDD
cd08030
11 100 90 1.05E-40 –
Pfam
PF05383
15 84 70 6.90E-22
IPR006630
PRINTS
PR00302
18 35 18 6.00E-10
IPR002344
PRINTS
PR00302
44 59 16 6.00E-10
IPR002344
SUPERFAMILY
SSF54928
109 191 83 7.74E-11
IPR012677
Gene3D
G3DSA:3.30.70.330
114 194 81 7.60E-09
IPR012677
ProSiteProfiles
PS50102
117 202 86 10.087
IPR000504
SMART
SM00360
118 190 73 8.10E-04
IPR000504
Pfam
PF00076
125 178 54 8.10E-07
IPR000504
PRINTS
PR00302
158 176 19 6.00E-10
IPR002344
MobiDBLite
mobidb-lite
198 223 26 – –
MobiDBLite
mobidb-lite
244 314 71 – –
PANTHER
PTHR22792
292 449 158 5.20E-192 –
PANTHER
PTHR22792:SF64
292 449 158 5.20E-192 –
Gene3D
G3DSA:3.30.70.330
299 416 118 1.90E-27
IPR012677
SMART
SM00360
321 380 60 2.6
IPR000504
CDD
cd12292
323 386 64 3.85E-18 –
Pfam
PF08777
325 415 91 4.80E-18
IPR014886
SUPERFAMILY
SSF54928
327 413 87 1.36E-08
IPR012677
MobiDBLite
mobidb-lite
408 452 45 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003676
Molecular function Nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
Subterm of
GO:0003723
Molecular function RNA binding Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
Subterm of
GO:0005634
Cellular component Nucleus A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
Subterm of
GO:0006396
Biological process RNA processing Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules.
Subterm of
Part of
GO:1990904
Cellular component Ribonucleoprotein complex A macromolecular complex containing both protein and RNA molecules.
Subterm of

Genome browser

LORE1 insertions 8

Expression data

Expression pattern

Expression pattern of Lj1g3v2050880.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj1g3v2050880.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.