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Lj1g3v2050890.1

Overview

Field Value
Gene ID Lj1g3v2050890
Transcript ID Lj1g3v2050890.1
Related isoforms 1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: myb-related protein 3R-1-like [Glycine max] gi|356518318|ref|XP_003527826.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
ProSiteProfiles
PS51294
32 83 52 18.111
IPR017930
SUPERFAMILY
SSF46689
33 89 57 9.66E-16
IPR009057
SMART
SM00717
36 85 50 1.40E-15
IPR001005
Pfam
PF00249
37 83 47 1.30E-16
IPR001005
Gene3D
G3DSA:1.10.10.60
39 100 62 2.70E-24
IPR009057
CDD
cd00167
40 83 44 1.85E-14 –
PANTHER
PTHR10641:SF599
60 263 204 1.40E-238 –
PANTHER
PTHR10641
60 263 204 1.40E-238 –
ProSiteProfiles
PS51294
84 139 56 33.012
IPR017930
SUPERFAMILY
SSF46689
86 182 97 8.27E-32
IPR009057
SMART
SM00717
88 137 50 1.40E-19
IPR001005
Pfam
PF00249
89 135 47 6.10E-19
IPR001005
CDD
cd00167
91 135 45 7.85E-17 –
Gene3D
G3DSA:1.10.10.60
101 142 42 2.10E-27
IPR009057
ProSiteProfiles
PS51294
140 190 51 19.627
IPR017930
SMART
SM00717
140 188 49 4.00E-15
IPR001005
Pfam
PF00249
141 184 44 1.90E-13
IPR001005
CDD
cd00167
143 183 41 7.39E-12 –
Gene3D
G3DSA:1.10.10.60
143 190 48 1.60E-21
IPR009057
MobiDBLite
mobidb-lite
205 252 48 – –
PANTHER
PTHR10641
438 638 201 1.40E-238 –
PANTHER
PTHR10641:SF599
438 638 201 1.40E-238 –
MobiDBLite
mobidb-lite
491 513 23 – –
PANTHER
PTHR10641
654 726 73 1.40E-238 –
PANTHER
PTHR10641:SF599
654 726 73 1.40E-238 –
MobiDBLite
mobidb-lite
668 711 44 – –
Coils
Coil
671 691 21 – –
MobiDBLite
mobidb-lite
727 766 40 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of

Genome browser

LORE1 insertions 23

Expression data

Expression pattern

Expression pattern of Lj1g3v2050890.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj1g3v2050890.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.