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| Field | Value |
|---|---|
| Gene ID | Lj1g3v2065480 |
| Transcript ID | Lj1g3v2065480.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: lissencephaly-1 homolog [Glycine max] gi|356518336|ref|XP_003527835.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 22 | 22 | – | – | |
| PANTHER | 4 | 165 | 162 | 1.00E-242 | – | |
| PANTHER | 4 | 165 | 162 | 1.00E-242 | – | |
| SMART | 87 | 124 | 38 | 0.0039 | ||
| Gene3D | 88 | 413 | 326 | 1.50E-51 | ||
| SUPERFAMILY | 89 | 414 | 326 | 5.19E-51 | ||
| CDD | 90 | 412 | 323 | 1.78E-43 | – | |
| ProSiteProfiles | 94 | 421 | 328 | 34.381 | ||
| SMART | 127 | 164 | 38 | 49 | ||
| ProSitePatterns | 151 | 165 | 15 | – | ||
| SMART | 188 | 226 | 39 | 4.20E-05 | ||
| Pfam | 193 | 225 | 33 | 0.0018 | ||
| ProSiteProfiles | 194 | 235 | 42 | 12.814 | ||
| PANTHER | 195 | 420 | 226 | 1.00E-242 | – | |
| PANTHER | 195 | 420 | 226 | 1.00E-242 | – | |
| SMART | 229 | 268 | 40 | 9.00E-08 | ||
| Pfam | 231 | 267 | 37 | 7.00E-05 | ||
| ProSiteProfiles | 236 | 267 | 32 | 11.511 | ||
| SMART | 275 | 316 | 42 | 0.0056 | ||
| Pfam | 280 | 315 | 36 | 0.056 | ||
| SMART | 323 | 360 | 38 | 0.087 | ||
| Pfam | 329 | 359 | 31 | 0.0019 | ||
| ProSiteProfiles | 330 | 369 | 40 | 10.275 | ||
| SMART | 367 | 412 | 46 | 0.22 | ||
| Pfam | 369 | 411 | 43 | 0.23 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of Lj1g3v2065480.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj1g3v2065480.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.