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Lj1g3v2095870.1

Overview

Field Value
Gene ID Lj1g3v2095870
Transcript ID Lj1g3v2095870.1
Lotus japonicus genome version MG20 v3.0
Description Papain-like cysteine peptidase XBCP3 [Medicago truncatula] gi|357508767|ref|XP_003624672.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Phobius
SIGNAL_PEPTIDE
1 16 16 – –
Phobius
SIGNAL_PEPTIDE_N_REGION
1 2 2 – –
Phobius
SIGNAL_PEPTIDE_H_REGION
3 11 9 – –
Phobius
SIGNAL_PEPTIDE_C_REGION
12 16 5 – –
Phobius
NON_CYTOPLASMIC_DOMAIN
17 261 245 – –
Gene3D
G3DSA:3.90.70.10
64 168 105 1.80E-08 –
SUPERFAMILY
SSF54001
88 152 65 2.13E-07 –
SMART
SM00848
95 143 49 3.40E-07
IPR013201
MobiDBLite
mobidb-lite
154 177 24 – –
SUPERFAMILY
SSF54001
179 251 73 2.94E-09 –
Gene3D
G3DSA:3.90.70.10
180 251 72 1.70E-08 –
SMART
SM00848
187 246 60 7.00E-10
IPR013201
Pfam
PF08246
187 245 59 1.50E-08
IPR013201

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Unable to find any GO terms for the transcript with the identifier.

Genome browser

LORE1 insertions 5

Expression data

Expression pattern

Expression pattern of Lj1g3v2095870.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj1g3v2095870.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.