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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR013201
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 132 results. Now displaying 1 of 3 with 50 rows per page. This search has taken 6.463s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0000069.1
n.a. cysteine proteinase [Lotus japonicus] gi|144905112|dbj|BAF56429.1| chr0 12894 14037 -
3 domain predictions
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Lj0g3v0101249.1
n.a. Senescence-associated gene 12 [Theobroma cacao] gi|508702326|gb|EOX94222.1| chr0 42921000 42924125 +
3 domain predictions
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Lj0g3v0162449.1
n.a. PREDICTED: LOW QUALITY PROTEIN: xylem cysteine proteinase 1-like [Cicer arietinum] gi|502078248|ref|XP_004485885.1| chr0 76605876 76607494 +
3 domain predictions
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Lj0g3v0169699.1
n.a. PREDICTED: xylem cysteine proteinase 1-like [Brachypodium distachyon] gi|357130141|ref|XP_003566711.1| chr0 81043982 81044829 +
3 domain predictions
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Lj0g3v0178109.1
n.a. cysteine proteinase [Lotus japonicus] gi|409190991|gb|AFV30165.1| chr0 86275384 86276573 +
3 domain predictions
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Lj0g3v0193949.1
n.a. JHL18I08.3 protein [Theobroma cacao] gi|508722984|gb|EOY14881.1| chr0 94654629 94655529 -
2 domain predictions
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Lj0g3v0231969.1
n.a. PREDICTED: KDEL-tailed cysteine endopeptidase CEP2-like [Cicer arietinum] gi|502143938|ref|XP_004505522.1| chr0 120379854 120381189 -
3 domain predictions
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Lj0g3v0257279.1
n.a. RecName: Full=Papain; AltName: Full=Papaya proteinase I; Short=PPI; AltName: Allergen=Car p 1; Flags: Precursorgi|167391|gb|AAB02650.1| papain precursor [Carica papaya] gi|129614|sp|P00784.1|PAPA1_CARPA chr0 133559074 133560097 +
3 domain predictions
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Lj0g3v0257289.1
n.a. RecName: Full=Papain; AltName: Full=Papaya proteinase I; Short=PPI; AltName: Allergen=Car p 1; Flags: Precursorgi|167391|gb|AAB02650.1| papain precursor [Carica papaya] gi|129614|sp|P00784.1|PAPA1_CARPA chr0 133559074 133560197 +
3 domain predictions
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Lj0g3v0275859.1
n.a. PREDICTED: KDEL-tailed cysteine endopeptidase CEP2-like [Cicer arietinum] gi|502143938|ref|XP_004505522.1| chr0 143071113 143072335 -
3 domain predictions
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Lj0g3v0276819.1
n.a. PREDICTED: cysteine proteinase RD21a-like [Fragaria vesca subsp]. vesca] gi|470110251|ref|XP_004291399.1| chr0 143674375 143676123 +
3 domain predictions
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Lj0g3v0287639.1
n.a. cysteine proteinase precursor [Glycine max] gi|351721126|ref|NP_001237199.1| chr0 149461775 149465973 +
3 domain predictions
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Lj0g3v0300659.1
n.a. cysteine proteinase [Lotus japonicus] gi|144905116|dbj|BAF56430.1| chr0 156241215 156242388 +
3 domain predictions
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Lj0g3v0357679.1
n.a. PREDICTED: vignain-like [Glycine max] gi|356515086|ref|XP_003526232.1| chr0 188313006 188313314 +
3 domain predictions
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Lj1g3v1686730.1
n.a. PREDICTED: cysteine proteinase RD21a-like [Cicer arietinum] gi|502125689|ref|XP_004499026.1| chr1 20018364 20020712 +
3 domain predictions
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Lj1g3v2095870.1
n.a. Papain-like cysteine peptidase XBCP3 [Medicago truncatula] gi|357508767|ref|XP_003624672.1| chr1 24979693 24981153 -
3 domain predictions
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Lj1g3v2126000.1
n.a. PREDICTED: cysteine proteinase RD21a-like [Glycine max] gi|356563584|ref|XP_003550041.1| chr1 25471394 25473788 -
3 domain predictions
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Lj1g3v2139680.1
n.a. PREDICTED: oryzain alpha chain-like [Cicer arietinum] gi|502131381|ref|XP_004500967.1| chr1 25694581 25697260 -
3 domain predictions
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Lj1g3v2140860.1
n.a. PREDICTED: cysteine proteinase RD19a-like [Glycine max] gi|356509908|ref|XP_003523684.1| chr1 25764771 25767284 +
3 domain predictions
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Lj1g3v3404280.1
n.a. PREDICTED: xylem cysteine proteinase 2-like [Glycine max] gi|356517188|ref|XP_003527271.1| chr1 39208042 39209908 +
3 domain predictions
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Lj1g3v4047190.1
n.a. cysteine proteinase [Lotus japonicus] gi|144905108|dbj|BAF56428.1| chr1 47739823 47741197 -
3 domain predictions
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Lj1g3v4047250.1
n.a. cysteine proteinase [Lotus japonicus] gi|144905108|dbj|BAF56428.1| chr1 47764683 47766120 -
3 domain predictions
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Lj1g3v4047270.1
n.a. cysteine proteinase [Lotus japonicus] gi|144905108|dbj|BAF56428.1| chr1 47769409 47770624 -
3 domain predictions
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Lj1g3v4047290.1
n.a. cysteine proteinase [Lotus japonicus] gi|144905116|dbj|BAF56430.1| chr1 47773952 47775075 -
3 domain predictions
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Lj2g3v0777370.1
n.a. cysteine proteinase [Lotus japonicus] gi|409190991|gb|AFV30165.1| chr2 12406294 12407836 -
2 domain predictions
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Lj3g3v0129310.1
n.a. CM0216.510.nc [Lotus japonicus] gi|164605519|dbj|BAF98585.1| chr3 977264 979016 +
3 domain predictions
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Lj3g3v0129320.1
n.a. CM0216.500.nc [Lotus japonicus] gi|164605518|dbj|BAF98584.1| chr3 983337 984924 +
3 domain predictions
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Lj3g3v1641950.1
n.a. cysteine proteinase [Lotus japonicus] gi|409190991|gb|AFV30165.1| chr3 20904157 20905269 +
3 domain predictions
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Lj3g3v1642060.1
n.a. cysteine proteinase [Lotus japonicus] gi|144905104|dbj|BAF56427.1| chr3 20939116 20940233 +
3 domain predictions
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Lj3g3v2309980.1
n.a. PREDICTED: oryzain alpha chain-like [Cicer arietinum] gi|502131381|ref|XP_004500967.1| chr3 28134120 28134548 +
3 domain predictions
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Lj3g3v3119740.1
n.a. PREDICTED: cysteine proteinase RD21a-like [Cucumis sativus] gi|449469929|ref|XP_004152671.1| chr3 38996444 38997524 -
2 domain predictions
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Lj4g3v1329780.1
n.a. Strong similarity to Dianthus cysteine proteinase (gb|U17135) [Arabidopsis thaliana] gi|2160175|gb|AAB60738.1| chr4 19986142 19988465 -
3 domain predictions
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Lj4g3v1388240.1
n.a. cysteine proteinase [Lotus japonicus] gi|409190991|gb|AFV30165.1| chr4 21268146 21274147 +
3 domain predictions
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Lj4g3v1399930.1
n.a. PREDICTED: vignain-like [Glycine max] gi|356563155|ref|XP_003549830.1| chr4 22040915 22042618 -
3 domain predictions
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Lj4g3v1399950.1
n.a. PREDICTED: vignain-like [Glycine max] gi|356563155|ref|XP_003549830.1| chr4 22045501 22047303 -
3 domain predictions
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Lj4g3v2203610.1
n.a. cysteine protease [Medicago sativa] gi|94420703|gb|ABF18679.1| chr4 30309164 30312174 -
3 domain predictions
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Lj5g3v0294860.1
n.a. PREDICTED: cysteine proteinase RD21a-like [Cicer arietinum] gi|502125689|ref|XP_004499026.1| chr5 2628473 2632929 +
3 domain predictions
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Lj5g3v2133770.1
n.a. PREDICTED: cysteine proteinase RD21a-like isoform X1 [Cicer arietinum] gi|502120445|ref|XP_004496965.1| chr5 30633092 30635902 -
3 domain predictions
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Lj6g3v0920720.1
n.a. PREDICTED: oryzain alpha chain-like [Cicer arietinum] gi|502131381|ref|XP_004500967.1| chr6 9425436 9426191 -
3 domain predictions
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Lj6g3v1018340.1
n.a. PREDICTED: cysteine proteinase RD21a-like [Fragaria vesca subsp]. vesca] gi|470110251|ref|XP_004291399.1| chr6 11325249 11325521 +
3 domain predictions
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Lj6g3v1995740.2
n.a. Cysteine proteinase [Medicago truncatula] gi|357446993|ref|XP_003593772.1| chr6 23120617 23122406 -
3 domain predictions
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Lj6g3v1995800.1
n.a. PREDICTED: LOW QUALITY PROTEIN: xylem cysteine proteinase 1-like [Cicer arietinum] gi|502078248|ref|XP_004485885.1| chr6 23148043 23149866 -
3 domain predictions
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LotjaGi1g1v0230500.1
n.a. Cysteine proteinase; TAIR: AT5G50260.1 Cysteine proteinases superfamily protein; Swiss-Prot: sp|P25803|CYSEP_PHAVU Vignain; TrEMBL-Plants: tr|I1KC88|I1KC88_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0230500 LjG1.1_chr1 53964568 53970290 +
3 domain predictions
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LotjaGi1g1v0357600.1
n.a. Cysteine proteinase; TAIR: AT5G43060.1 Granulin repeat cysteine protease family protein; Swiss-Prot: sp|Q9FMH8|RD21B_ARATH Probable cysteine protease RD21B; TrEMBL-Plants: tr|I1M8Q5|I1M8Q5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0357600 LjG1.1_chr1 83144114 83147077 +
3 domain predictions
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LotjaGi1g1v0408800_LC.1
n.a. Cysteine protease family protein; TAIR: AT1G29090.1 Cysteine proteinases superfamily protein; Swiss-Prot: sp|P04989|CYSP2_DICDI Cysteine proteinase 2; TrEMBL-Plants: tr|I3RZU2|I3RZU2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0408800_LC LjG1.1_chr1 89867897 89869228 -
3 domain predictions
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LotjaGi1g1v0408900_LC.1
n.a. Cysteine protease; TAIR: AT5G60360.1 aleurain-like protease; Swiss-Prot: sp|Q8H166|ALEU_ARATH Thiol protease aleurain; TrEMBL-Plants: tr|I3RZU2|I3RZU2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0408900_LC LjG1.1_chr1 89871506 89873762 +
3 domain predictions
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LotjaGi1g1v0411500_LC.1
n.a. Cysteine protease family protein; TAIR: AT1G09850.1 xylem bark cysteine peptidase 3; Swiss-Prot: sp|P14080|PAPA2_CARPA Chymopapain; TrEMBL-Plants: tr|I3RZU2|I3RZU2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0411500_LC LjG1.1_chr1 90210974 90216082 -
3 domain predictions
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LotjaGi1g1v0412200_LC.1
n.a. Cysteine protease, putative; TAIR: AT1G09850.1 xylem bark cysteine peptidase 3; Swiss-Prot: sp|P14080|PAPA2_CARPA Chymopapain; TrEMBL-Plants: tr|I3RZU2|I3RZU2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0412200_LC LjG1.1_chr1 90309651 90312793 -
3 domain predictions
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LotjaGi1g1v0412200_LC.2
n.a. Cysteine protease, putative; TAIR: AT1G09850.1 xylem bark cysteine peptidase 3; Swiss-Prot: sp|P14080|PAPA2_CARPA Chymopapain; TrEMBL-Plants: tr|I3RZU2|I3RZU2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0412200_LC LjG1.1_chr1 90309653 90312777 -
3 domain predictions
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LotjaGi1g1v0423400.1
n.a. Cysteine protease family protein; TAIR: AT1G09850.1 xylem bark cysteine peptidase 3; Swiss-Prot: sp|Q9LT78|RD21C_ARATH Probable cysteine protease RD21C; TrEMBL-Plants: tr|A0A1J7IIQ9|A0A1J7IIQ9_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0423400 LjG1.1_chr1 91757413 91763963 -
3 domain predictions
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