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| Field | Value |
|---|---|
| Gene ID | Lj1g3v2098340 |
| Transcript ID | Lj1g3v2098340.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: pentatricopeptide repeat-containing protein At4g13650-like [Glycine max] gi|356506811|ref|XP_003522169.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| ProSiteProfiles | 15 | 49 | 35 | 8.089 | ||
| PANTHER | 15 | 217 | 203 | 0 | – | |
| PANTHER | 15 | 217 | 203 | 0 | – | |
| ProSiteProfiles | 50 | 80 | 31 | 8.188 | ||
| TIGRFAM | 55 | 83 | 29 | 6.70E-04 | ||
| Pfam | 55 | 81 | 27 | 2.20E-04 | ||
| Gene3D | 56 | 88 | 33 | 1.50E-09 | ||
| ProSiteProfiles | 81 | 115 | 35 | 9.788 | ||
| TIGRFAM | 83 | 112 | 30 | 3.10E-05 | ||
| Pfam | 83 | 112 | 30 | 1.90E-05 | ||
| ProSiteProfiles | 116 | 150 | 35 | 6.029 | ||
| ProSiteProfiles | 151 | 181 | 31 | 6.752 | ||
| Gene3D | 156 | 234 | 79 | 1.50E-09 | ||
| Pfam | 158 | 180 | 23 | 0.016 | ||
| ProSiteProfiles | 182 | 216 | 35 | 10.633 | ||
| TIGRFAM | 184 | 217 | 34 | 2.30E-06 | ||
| Pfam | 184 | 213 | 30 | 1.40E-07 | ||
| PANTHER | 253 | 563 | 311 | 0 | – | |
| PANTHER | 253 | 563 | 311 | 0 | – | |
| Pfam | 284 | 331 | 48 | 6.50E-12 | ||
| ProSiteProfiles | 284 | 318 | 35 | 10.337 | ||
| TIGRFAM | 286 | 320 | 35 | 1.60E-04 | ||
| ProSiteProfiles | 319 | 353 | 35 | 7.465 | ||
| ProSiteProfiles | 354 | 384 | 31 | 7.662 | ||
| Gene3D | 357 | 428 | 72 | 1.50E-09 | ||
| Pfam | 359 | 382 | 24 | 0.057 | ||
| Pfam | 384 | 432 | 49 | 2.10E-11 | ||
| ProSiteProfiles | 385 | 419 | 35 | 11.071 | ||
| TIGRFAM | 388 | 421 | 34 | 1.10E-05 | ||
| ProSiteProfiles | 420 | 455 | 36 | 7.794 | ||
| ProSiteProfiles | 456 | 486 | 31 | 7.114 | ||
| Pfam | 459 | 483 | 25 | 0.0061 | ||
| TIGRFAM | 460 | 483 | 24 | 0.0024 | ||
| Gene3D | 496 | 551 | 56 | 1.50E-09 | ||
| ProSiteProfiles | 522 | 556 | 35 | 5.612 | ||
| Pfam | 558 | 681 | 124 | 2.70E-37 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of Lj1g3v2098340.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj1g3v2098340.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.