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Lj1g3v2110490.1

Overview

Field Value
Gene ID Lj1g3v2110490
Transcript ID Lj1g3v2110490.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: eukaryotic translation initiation factor 2 subunit alpha-like [Glycine max] gi|356539999|ref|XP_003538479.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR10602:SF0
1 163 163 9.90E-191 –
PANTHER
PTHR10602
1 163 163 9.90E-191
IPR011488
SUPERFAMILY
SSF50249
7 89 83 5.89E-17
IPR012340
Gene3D
G3DSA:2.40.50.140
7 93 87 2.80E-39 –
CDD
cd04452
15 90 76 5.63E-30 –
Pfam
PF00575
15 89 75 5.40E-13
IPR003029
SMART
SM00316
16 89 74 4.70E-11
IPR022967
ProSiteProfiles
PS50126
18 89 72 15.904
IPR003029
SUPERFAMILY
SSF116742
91 196 106 3.40E-29
IPR024054
Gene3D
G3DSA:1.10.150.190
94 196 103 1.10E-37
IPR024054
Pfam
PF07541
127 257 131 7.10E-40
IPR011488
PANTHER
PTHR10602
183 320 138 9.90E-191
IPR011488
PANTHER
PTHR10602:SF0
183 320 138 9.90E-191 –
SUPERFAMILY
SSF110993
200 316 117 7.85E-36
IPR024055
Gene3D
G3DSA:3.30.70.1130
201 320 120 2.10E-48
IPR024055

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003676
Molecular function Nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
Subterm of
GO:0003723
Molecular function RNA binding Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
Subterm of
GO:0003743
Molecular function Translation initiation factor activity Functions in the initiation of ribosome-mediated translation of mRNA into a polypeptide.
Subterm of

Genome browser

LORE1 insertions 2

Expression data

Expression pattern

Expression pattern of Lj1g3v2110490.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj1g3v2110490.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.