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| Field | Value |
|---|---|
| Gene ID | Lj1g3v2110610 |
| Transcript ID | Lj1g3v2110610.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: pentatricopeptide repeat-containing protein At1g09900-like [Glycine max] gi|356510082|ref|XP_003523769.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 78 | 115 | 38 | – | – | |
| ProSiteProfiles | 110 | 144 | 35 | 7.081 | ||
| PANTHER | 115 | 460 | 346 | 6.10E-300 | – | |
| PANTHER | 115 | 460 | 346 | 6.10E-300 | – | |
| ProSiteProfiles | 145 | 179 | 35 | 10.326 | ||
| TIGRFAM | 148 | 181 | 34 | 3.70E-04 | ||
| Pfam | 176 | 208 | 33 | 5.90E-12 | ||
| ProSiteProfiles | 180 | 210 | 31 | 10.753 | ||
| TIGRFAM | 182 | 208 | 27 | 1.00E-06 | ||
| Gene3D | 191 | 243 | 53 | 1.20E-07 | ||
| Pfam | 211 | 260 | 50 | 1.30E-14 | ||
| ProSiteProfiles | 212 | 246 | 35 | 12.145 | ||
| TIGRFAM | 214 | 248 | 35 | 3.60E-07 | ||
| ProSiteProfiles | 247 | 281 | 35 | 11.827 | ||
| TIGRFAM | 249 | 283 | 35 | 4.90E-06 | ||
| Gene3D | 280 | 334 | 55 | 1.20E-07 | ||
| Pfam | 281 | 330 | 50 | 2.50E-19 | ||
| ProSiteProfiles | 282 | 316 | 35 | 14.239 | ||
| TIGRFAM | 284 | 318 | 35 | 2.30E-10 | ||
| ProSiteProfiles | 317 | 351 | 35 | 11.959 | ||
| TIGRFAM | 319 | 352 | 34 | 9.30E-08 | ||
| Pfam | 347 | 379 | 33 | 9.70E-12 | ||
| ProSiteProfiles | 352 | 386 | 35 | 12.134 | ||
| TIGRFAM | 354 | 387 | 34 | 9.50E-08 | ||
| Pfam | 386 | 435 | 50 | 3.90E-15 | ||
| ProSiteProfiles | 387 | 421 | 35 | 11.86 | ||
| TIGRFAM | 390 | 423 | 34 | 1.40E-07 | ||
| SUPERFAMILY | 394 | 596 | 203 | 1.28E-08 | – | |
| ProSiteProfiles | 422 | 456 | 35 | 13.252 | ||
| TIGRFAM | 424 | 456 | 33 | 1.20E-08 | ||
| ProSiteProfiles | 489 | 523 | 35 | 12.573 | ||
| Pfam | 490 | 536 | 47 | 6.70E-16 | ||
| TIGRFAM | 491 | 525 | 35 | 7.40E-11 | ||
| Gene3D | 492 | 585 | 94 | 1.20E-07 | ||
| PANTHER | 493 | 635 | 143 | 6.10E-300 | – | |
| PANTHER | 493 | 635 | 143 | 6.10E-300 | – | |
| ProSiteProfiles | 524 | 558 | 35 | 13.219 | ||
| TIGRFAM | 526 | 560 | 35 | 3.30E-08 | ||
| Pfam | 558 | 604 | 47 | 2.90E-14 | ||
| ProSiteProfiles | 559 | 593 | 35 | 11.52 | ||
| TIGRFAM | 561 | 595 | 35 | 1.60E-06 | ||
| ProSiteProfiles | 594 | 628 | 35 | 8.934 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of Lj1g3v2110610.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj1g3v2110610.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.