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Lj1g3v2126090.1

Overview

Field Value
Gene ID Lj1g3v2126090
Transcript ID Lj1g3v2126090.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: ornithine carbamoyltransferase, chloroplastic-like [Glycine max] gi|356510161|ref|XP_003523808.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR11405
54 363 310 8.60E-167 –
SUPERFAMILY
SSF53671
61 363 303 2.36E-102
IPR006130
Gene3D
G3DSA:3.40.50.1370
61 199 139 8.10E-52
IPR006130
Hamap
MF_01109
61 363 303 71.181
IPR024904
TIGRFAM
TIGR00658
62 362 301 1.60E-112
IPR002292
Pfam
PF02729
62 203 142 9.50E-45
IPR006132
PRINTS
PR00102
106 120 15 5.30E-27
IPR002292
PRINTS
PR00100
108 127 20 1.30E-24
IPR006130
PRINTS
PR00102
139 152 14 5.30E-27
IPR002292
PRINTS
PR00102
179 193 15 5.30E-27
IPR002292
PRINTS
PR00100
190 201 12 1.30E-24
IPR006130
Gene3D
G3DSA:3.40.50.1370
200 349 150 1.10E-61
IPR006130
Pfam
PF00185
209 360 152 1.00E-53
IPR006131
PRINTS
PR00102
279 289 11 5.30E-27
IPR002292
PRINTS
PR00100
315 324 10 1.30E-24
IPR006130
PRINTS
PR00100
327 350 24 1.30E-24
IPR006130
PRINTS
PR00102
341 352 12 5.30E-27
IPR002292

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0004585
Molecular function Ornithine carbamoyltransferase activity Catalysis of the reaction: carbamoyl phosphate + L-ornithine = phosphate + L-citrulline.
Subterm of
GO:0006520
Biological process Cellular amino acid metabolic process The chemical reactions and pathways involving amino acids, carboxylic acids containing one or more amino groups, as carried out by individual cells.
Subterm of
GO:0006591
Biological process Ornithine metabolic process The chemical reactions and pathways involving ornithine, an amino acid only rarely found in proteins, but which is important in living organisms as an intermediate in the reactions of the urea cycle and in arginine biosynthesis.
Subterm of
GO:0016597
Molecular function Amino acid binding Interacting selectively and non-covalently with an amino acid, organic acids containing one or more amino substituents.
Subterm of
GO:0016743
Molecular function Carboxyl- or carbamoyltransferase activity Catalysis of the transfer of a carboxyl- or carbamoyl group from one compound (donor) to another (acceptor).
Subterm of

Genome browser

LORE1 insertions 11

Expression data

Expression pattern

Expression pattern of Lj1g3v2126090.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj1g3v2126090.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.