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Lj1g3v2140840.1

Overview

Field Value
Gene ID Lj1g3v2140840
Transcript ID Lj1g3v2140840.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: transcription initiation factor IIF subunit beta-like [Glycine max] gi|356518378|ref|XP_003527856.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR10445:SF1
1 254 254 1.70E-133 –
PANTHER
PTHR10445
1 254 254 1.70E-133
IPR003196
CDD
cd07980
9 117 109 1.84E-18 –
SUPERFAMILY
SSF50916
9 118 110 1.49E-14
IPR011039
Pfam
PF02270
102 249 148 3.70E-33
IPR003196
MobiDBLite
mobidb-lite
163 188 26 – –
SUPERFAMILY
SSF46785
184 250 67 3.81E-21
IPR011991
Gene3D
G3DSA:1.10.10.10
184 250 67 3.00E-30
IPR011991

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005674
Cellular component Transcription factor TFIIF complex A general transcription initiation factor which in humans consists of a heterodimer of an alpha and a beta subunit. Helps recruit RNA polymerase II to the initiation complex and promotes translation elongation.
Subterm of
Part of
GO:0006366
Biological process Transcription by RNA polymerase II The synthesis of RNA from a DNA template by RNA polymerase II, originating at an RNA polymerase II promoter. Includes transcription of messenger RNA (mRNA) and certain small nuclear RNAs (snRNAs).
Subterm of
GO:0006367
Biological process Transcription initiation from RNA polymerase II promoter Any process involved in the assembly of the RNA polymerase II preinitiation complex (PIC) at an RNA polymerase II promoter region of a DNA template, resulting in the subsequent synthesis of RNA from that promoter. The initiation phase includes PIC assembly and the formation of the first few bonds in the RNA chain, including abortive initiation, which occurs when the first few nucleotides are repeatedly synthesized and then released. Promoter clearance, or release, is the transition between the initiation and elongation phases of transcription.
Subterm of
Part of

Genome browser

LORE1 insertions 10

Expression data

Expression pattern

Expression pattern of Lj1g3v2140840.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj1g3v2140840.1, powered by CORGI.

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