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| Field | Value |
|---|---|
| Gene ID | Lj1g3v2264740 |
| Transcript ID | Lj1g3v2264740.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: hippocampus abundant transcript-like protein 1-like [Glycine max] gi|356509042|ref|XP_003523261.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 256 | 256 | 3.50E-144 | – | |
| Phobius | 1 | 11 | 11 | – | – | |
| PANTHER | 1 | 256 | 256 | 3.50E-144 | – | |
| ProSiteProfiles | 11 | 256 | 246 | 13.76 | ||
| TMHMM | 12 | 34 | 23 | – | – | |
| Phobius | 12 | 30 | 19 | – | – | |
| SUPERFAMILY | 13 | 199 | 187 | 1.10E-19 | ||
| Pfam | 15 | 219 | 205 | 2.80E-17 | ||
| Gene3D | 15 | 197 | 183 | 1.50E-20 | – | |
| Phobius | 31 | 49 | 19 | – | – | |
| TMHMM | 49 | 71 | 23 | – | – | |
| Phobius | 50 | 72 | 23 | – | – | |
| CDD | 60 | 198 | 139 | 2.15E-07 | ||
| Phobius | 73 | 83 | 11 | – | – | |
| TMHMM | 84 | 103 | 20 | – | – | |
| Phobius | 84 | 103 | 20 | – | – | |
| Phobius | 104 | 108 | 5 | – | – | |
| Phobius | 109 | 135 | 27 | – | – | |
| TMHMM | 113 | 135 | 23 | – | – | |
| Phobius | 136 | 146 | 11 | – | – | |
| Phobius | 147 | 169 | 23 | – | – | |
| TMHMM | 147 | 169 | 23 | – | – | |
| Phobius | 170 | 174 | 5 | – | – | |
| TMHMM | 173 | 192 | 20 | – | – | |
| Phobius | 175 | 193 | 19 | – | – | |
| Phobius | 194 | 256 | 63 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Transmembrane transporter activity | Enables the transfer of a substance, usually a specific substance or a group of related substances, from one side of a membrane to the other. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of Lj1g3v2264740.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj1g3v2264740.1, powered by CORGI.
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