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Lj1g3v2740220.1

Overview

Field Value
Gene ID Lj1g3v2740220
Transcript ID Lj1g3v2740220.1
Lotus japonicus genome version MG20 v3.0
Description BEL1-like homeodomain protein [Medicago truncatula] gi|357438117|ref|XP_003589334.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
SMART
SM00574
166 317 152 4.50E-54
IPR006563
PANTHER
PTHR11850:SF111
173 627 455 5.40E-218 –
PANTHER
PTHR11850
173 627 455 5.40E-218 –
Pfam
PF07526
173 316 144 2.20E-49
IPR006563
MobiDBLite
mobidb-lite
200 245 46 – –
ProSiteProfiles
PS50071
355 418 64 12.6
IPR001356
Gene3D
G3DSA:1.10.10.60
357 431 75 1.20E-25
IPR009057
SMART
SM00389
358 422 65 3.00E-09
IPR001356
CDD
cd00086
358 419 62 5.57E-12 –
SUPERFAMILY
SSF46689
359 425 67 3.94E-17
IPR009057
Pfam
PF05920
375 414 40 4.20E-15
IPR008422
MobiDBLite
mobidb-lite
431 464 34 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of
GO:0006355
Biological process Regulation of transcription, DNA-templated Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
Subterm of
Regulates

Genome browser

LORE1 insertions 8

Expression data

Expression pattern

Expression pattern of Lj1g3v2740220.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj1g3v2740220.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.