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Lj1g3v2740230.1

Overview

Field Value
Gene ID Lj1g3v2740230
Transcript ID Lj1g3v2740230.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: GTPase HflX-like [Glycine max] gi|356564314|ref|XP_003550400.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
70 124 55 – –
PANTHER
PTHR10229:SF2
94 546 453 2.50E-303 –
PANTHER
PTHR10229
94 546 453 2.50E-303
IPR016496
TIGRFAM
TIGR03156
138 493 356 9.00E-135
IPR016496
Pfam
PF13167
158 246 89 4.60E-31
IPR025121
Hamap
MF_00900
160 523 364 45.685
IPR016496
Pfam
PF16360
249 326 78 6.30E-27
IPR032305
CDD
cd01878
291 494 204 2.32E-110
IPR030394
Coils
Coil
305 325 21 – –
SUPERFAMILY
SSF52540
332 505 174 1.05E-42
IPR027417
Gene3D
G3DSA:3.40.50.300
332 495 164 5.00E-37
IPR027417
ProSiteProfiles
PS51705
332 498 167 68.681
IPR030394
TIGRFAM
TIGR00231
333 489 157 1.30E-13
IPR005225
PRINTS
PR00326
334 354 21 1.30E-07
IPR006073
Pfam
PF01926
334 452 119 2.10E-20
IPR006073
PRINTS
PR00326
401 419 19 1.30E-07
IPR006073

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005525
Molecular function GTP binding Interacting selectively and non-covalently with GTP, guanosine triphosphate.
Subterm of

Genome browser

LORE1 insertions 65

Expression data

Expression pattern

Expression pattern of Lj1g3v2740230.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj1g3v2740230.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.