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Lj1g3v2808080.1

Overview

Field	Value
Gene ID	Lj1g3v2808080
Transcript ID	Lj1g3v2808080.1
Related isoforms 1	Lj1g3v2808080.2
Lotus japonicus genome version	MG20 v3.0
Description	Homeodomain-like [Medicago truncatula] gi\|87162772\|gb\|ABD28567.1\|
Working Lj name	n.a.

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	49	70	22	–	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	119	164	46	–	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	193	223	31	–	–
PANTHER	PTHR21717 View details on PTHR21717 Search for proteins/transripts with this domain View external data on PTHR21717	274	820	547	3.10E-164	–
PANTHER	PTHR21717:SF23 View details on PTHR21717:SF23 Search for proteins/transripts with this domain View external data on PTHR21717:SF23	274	820	547	3.10E-164	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	296	318	23	–	–
SUPERFAMILY	SSF46689 View details on SSF46689 Search for proteins/transripts with this domain View external data on SSF46689	647	697	51	7.39E-07	IPR009057 Show description in modal box View details on IPR009057 Search for proteins/transripts with this domain View on EBI InterPro Service
CDD	cd11660 View details on cd11660 Search for proteins/transripts with this domain View external data on cd11660	651	695	45	1.34E-06	–

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0003677 View details of GO:0003677 AmiGO InterPro QuickGO	Molecular function	DNA binding	Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).	Subterm of View details of GO:0003676

Genome browser

Expression data

Expression pattern

Expression pattern of Lj1g3v2808080.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj1g3v2808080.1, powered by CORGI.

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