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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • PTHR21717
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 33 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 0.029s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0116239.1
n.a. protein TRF-like 10 [Arabidopsis thaliana] gi|30680203|ref|NP_195998.2| chr0 51095696 51102635 +
1 domain prediction
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Lj0g3v0116239.2
n.a. Uncharacterized protein isoform 2 [Theobroma cacao] gi|508701719|gb|EOX93615.1| chr0 51095696 51102635 +
1 domain prediction
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Lj0g3v0256559.1
n.a. Os06g0181300 [Oryza sativa Japonica Group] gi|115466758|ref|NP_001056978.1| chr0 133190228 133195357 -
1 domain prediction
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Lj0g3v0271999.1
n.a. Myb-like HTH transcriptional regulator family protein [Theobroma cacao] gi|508701038|gb|EOX92934.1| chr0 140940943 140947376 +
1 domain prediction
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Lj0g3v0283089.1
n.a. PREDICTED: telomere repeat-binding protein 4-like [Glycine max] gi|356539862|ref|XP_003538412.1| chr0 146720460 146725827 +
1 domain prediction
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Lj0g3v0283089.2
n.a. PREDICTED: telomere repeat-binding protein 4-like [Glycine max] gi|356539862|ref|XP_003538412.1| chr0 146720460 146725827 +
1 domain prediction
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Lj0g3v0307919.1
n.a. PREDICTED: telomere repeat-binding protein 4-like [Cicer arietinum] gi|502137637|ref|XP_004503150.1| chr0 160749895 160750587 +
1 domain prediction
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Lj0g3v0324039.1
n.a. PHD finger protein 21A [Medicago truncatula] gi|357445323|ref|XP_003592939.1| chr0 169321991 169325623 -
1 domain prediction
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Lj0g3v0324039.2
n.a. PHD finger protein 21A [Medicago truncatula] gi|357445323|ref|XP_003592939.1| chr0 169321991 169325623 -
1 domain prediction
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Lj0g3v0329879.1
n.a. PREDICTED: telomere repeat-binding protein 5-like [Glycine max] gi|356547261|ref|XP_003542034.1| chr0 172437085 172440220 -
1 domain prediction
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Lj0g3v0329879.2
n.a. PREDICTED: telomere repeat-binding protein 5-like [Cicer arietinum] gi|502081867|ref|XP_004486994.1| chr0 172437085 172442882 -
1 domain prediction
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Lj1g3v1548920.1
n.a. PREDICTED: A-agglutinin anchorage subunit-like [Cicer arietinum] gi|502133104|ref|XP_004501652.1| chr1 18588288 18595471 -
1 domain prediction
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Lj1g3v2808080.1
n.a. Homeodomain-like [Medicago truncatula] gi|87162772|gb|ABD28567.1| chr1 31853166 31860172 -
1 domain prediction
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Lj1g3v3343860.1
n.a. Telomeric repeat-binding factor [Medicago truncatula] gi|357467497|ref|XP_003604033.1| chr1 38302579 38305375 +
1 domain prediction
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Lj1g3v3444280.1
n.a. PREDICTED: telomere repeat-binding protein 4-like [Glycine max] gi|356566517|ref|XP_003551477.1| chr1 39966902 39972403 +
1 domain prediction
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Lj1g3v3444280.2
n.a. PREDICTED: telomere repeat-binding protein 4-like [Glycine max] gi|356566517|ref|XP_003551477.1| chr1 39966902 39971692 +
1 domain prediction
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Lj2g3v1968560.1
n.a. n.a. chr2 28727895 28732300 -
1 domain prediction
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Lj2g3v1968560.2
n.a. PREDICTED: telomere repeat-binding factor 2-like isoform X1 [Cicer arietinum] gi|502160644|ref|XP_004511827.1| chr2 28727895 28732300 -
1 domain prediction
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Lj3g3v2634550.1
n.a. Myb family transcription factor [Medicago truncatula] gi|357513929|ref|XP_003627253.1| chr3 32257630 32264782 -
1 domain prediction
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Lj3g3v3211100.1
n.a. PREDICTED: telomere repeat-binding protein 5-like [Glycine max] gi|356544580|ref|XP_003540727.1| chr3 39595512 39599739 +
1 domain prediction
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Lj4g3v0756940.1
n.a. PREDICTED: telomere repeat-binding factor 2-like [Cicer arietinum] gi|502152722|ref|XP_004509061.1| chr4 11810523 11819021 +
1 domain prediction
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Lj5g3v0659660.1
n.a. protein TRF-like 8 [Arabidopsis thaliana] gi|30687001|ref|NP_850275.1| chr5 9254626 9262216 +
1 domain prediction
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Lj5g3v0659660.2
n.a. protein TRF-like 8 [Arabidopsis thaliana] gi|30687001|ref|NP_850275.1| chr5 9254626 9262695 +
1 domain prediction
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Lj5g3v0659660.3
n.a. protein TRF-like 8 [Arabidopsis thaliana] gi|30687001|ref|NP_850275.1| chr5 9260071 9262695 +
1 domain prediction
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Lj5g3v1516750.1
n.a. PREDICTED: telomere repeat-binding factor 4-like isoform X1 [Cicer arietinum] gi|502081399|ref|XP_004486855.1| chr5 22107626 22111188 -
1 domain prediction
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Lj6g3v1618130.1
n.a. PREDICTED: telomere repeat-binding factor 1-like [Cicer arietinum] gi|502080243|ref|XP_004486503.1| chr6 18150958 18158030 -
1 domain prediction
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LotjaGi1g1v0576200.1
n.a. Telomere-binding family protein; TAIR: AT1G07540.1 TRF-like 2; Swiss-Prot: sp|Q6R0E3|TRP5_ARATH Telomere repeat-binding protein 5; TrEMBL-Plants: tr|I1MDE4|I1MDE4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0576200 LjG1.1_chr1 111348680 111354657 +
1 domain prediction
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LotjaGi1g1v0579900.1
n.a. Telomere repeat-binding protein 5; TAIR: AT5G13820.1 telomeric DNA binding protein 1; Swiss-Prot: sp|Q9FFY9|TRP4_ARATH Telomere repeat-binding protein 4; TrEMBL-Plants: tr|K7MT46|K7MT46_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0579900 LjG1.1_chr1 111933230 111939191 +
1 domain prediction
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LotjaGi1g1v0579900.2
n.a. Telomere repeat-binding protein 5; TAIR: AT5G13820.1 telomeric DNA binding protein 1; Swiss-Prot: sp|Q9FFY9|TRP4_ARATH Telomere repeat-binding protein 4; TrEMBL-Plants: tr|K7MT46|K7MT46_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0579900 LjG1.1_chr1 111933413 111938872 +
1 domain prediction
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LotjaGi1g1v0579900.3
n.a. Telomere repeat-binding protein 5; TAIR: AT5G13820.1 telomeric DNA binding protein 1; Swiss-Prot: sp|Q9FFY9|TRP4_ARATH Telomere repeat-binding protein 4; TrEMBL-Plants: tr|K7MT46|K7MT46_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0579900 LjG1.1_chr1 111933460 111938872 +
1 domain prediction
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LotjaGi2g1v0374400.1
n.a. Telomere-binding family protein; TAIR: AT3G46590.1 TRF-like 1; Swiss-Prot: sp|Q9SNB9|TRP2_ARATH Telomere repeat-binding protein 2; TrEMBL-Plants: tr|K7LPN4|K7LPN4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0374400 LjG1.1_chr2 87116211 87120946 +
1 domain prediction
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LotjaGi6g1v0062100.1
n.a. Telomere binding protein; TAIR: AT3G12560.1 TRF-like 9; Swiss-Prot: sp|Q9C7B1|TRP3_ARATH Telomere repeat-binding protein 3; TrEMBL-Plants: tr|I1LMF8|I1LMF8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0062100 LjG1.1_chr6 11314174 11319701 +
1 domain prediction
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LotjaGi6g1v0062100.2
n.a. Telomere binding protein; TAIR: AT3G12560.1 TRF-like 9; Swiss-Prot: sp|Q9C7B1|TRP3_ARATH Telomere repeat-binding protein 3; TrEMBL-Plants: tr|I1LMF8|I1LMF8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0062100 LjG1.1_chr6 11314251 11319576 +
1 domain prediction
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