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| Field | Value |
|---|---|
| Gene ID | Lj1g3v2927340 |
| Transcript ID | Lj1g3v2927340.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: pentatricopeptide repeat-containing protein At2g44880-like [Glycine max] gi|356567012|ref|XP_003551717.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 55 | 573 | 519 | 9.00E-302 | – | |
| PANTHER | 55 | 573 | 519 | 9.00E-302 | – | |
| ProSiteProfiles | 91 | 121 | 31 | 5.678 | ||
| ProSiteProfiles | 135 | 169 | 35 | 6.226 | ||
| ProSiteProfiles | 170 | 200 | 31 | 8.057 | ||
| Pfam | 175 | 200 | 26 | 0.051 | ||
| ProSiteProfiles | 201 | 231 | 31 | 9.756 | ||
| Pfam | 203 | 232 | 30 | 1.30E-06 | ||
| TIGRFAM | 203 | 233 | 31 | 2.80E-05 | ||
| Gene3D | 232 | 426 | 195 | 3.00E-05 | ||
| ProSiteProfiles | 232 | 266 | 35 | 11.422 | ||
| Pfam | 235 | 264 | 30 | 2.80E-08 | ||
| TIGRFAM | 235 | 264 | 30 | 9.20E-06 | ||
| TIGRFAM | 265 | 294 | 30 | 2.50E-07 | ||
| ProSiteProfiles | 267 | 293 | 27 | 7.388 | ||
| Pfam | 293 | 338 | 46 | 1.80E-11 | ||
| ProSiteProfiles | 294 | 329 | 36 | 11.619 | ||
| TIGRFAM | 296 | 331 | 36 | 5.30E-10 | ||
| ProSiteProfiles | 365 | 395 | 31 | 8.298 | ||
| Pfam | 370 | 395 | 26 | 8.80E-04 | ||
| ProSiteProfiles | 396 | 430 | 35 | 13.11 | ||
| Pfam | 397 | 442 | 46 | 5.80E-10 | ||
| TIGRFAM | 399 | 432 | 34 | 1.30E-09 | ||
| ProSiteProfiles | 431 | 465 | 35 | 8.955 | ||
| Gene3D | 464 | 549 | 86 | 3.00E-05 | ||
| ProSiteProfiles | 466 | 496 | 31 | 6.73 | ||
| Pfam | 469 | 493 | 25 | 0.034 | ||
| ProSiteProfiles | 498 | 532 | 35 | 5.338 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of Lj1g3v2927340.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj1g3v2927340.1, powered by CORGI.
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