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Lj1g3v2975950.2

Overview

Field Value
Gene ID Lj1g3v2975950
Transcript ID Lj1g3v2975950.2
Related isoforms 1
Lotus japonicus genome version MG20 v3.0
Description starch synthase IIb precursor [Lotus japonicus] gi|221063676|gb|ACL98482.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
101 125 25 – –
PANTHER
PTHR12526
131 225 95 0 –
PANTHER
PTHR12526:SF337
131 225 95 0 –
PANTHER
PTHR12526:SF337
296 786 491 0 –
PANTHER
PTHR12526
296 786 491 0 –
SUPERFAMILY
SSF53756
299 782 484 5.02E-110 –
Hamap
MF_00484
299 786 488 36.467
IPR011835
TIGRFAM
TIGR02095
299 783 485 1.30E-167
IPR011835
CDD
cd03791
300 783 484 0 –
Pfam
PF08323
300 542 243 1.10E-64
IPR013534
Gene3D
G3DSA:3.40.50.2000
557 767 211 2.00E-74 –
Pfam
PF00534
599 744 146 1.10E-14
IPR001296

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0004373
Molecular function Glycogen (starch) synthase activity Catalysis of the reaction: UDP-glucose + (1,4)-alpha-D-glucosyl(n) = UDP + (1,4)-alpha-D-glucosyl(n+1).
Subterm of

Genome browser

LORE1 insertions 50

Expression data

Expression pattern

Expression pattern of Lj1g3v2975950.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj1g3v2975950.2, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.