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Lj1g3v2979210.1

Overview

Field Value
Gene ID Lj1g3v2979210
Transcript ID Lj1g3v2979210.1
Lotus japonicus genome version MG20 v3.0
Description MIXTA-like transcription factor [Lotus japonicus] gi|346425853|gb|AEO27487.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR10641
1 195 195 1.30E-158 –
PANTHER
PTHR10641:SF546
1 195 195 1.30E-158 –
Gene3D
G3DSA:1.10.10.60
5 64 60 1.40E-25
IPR009057
ProSiteProfiles
PS51294
9 61 53 17.857
IPR017930
SUPERFAMILY
SSF46689
11 108 98 1.03E-29
IPR009057
SMART
SM00717
13 63 51 6.60E-14
IPR001005
Pfam
PF00249
14 61 48 1.70E-16
IPR001005
CDD
cd00167
16 61 46 1.84E-10 –
ProSiteProfiles
PS51294
62 116 55 24.922
IPR017930
Gene3D
G3DSA:1.10.10.60
65 117 53 5.90E-25
IPR009057
SMART
SM00717
66 114 49 1.50E-15
IPR001005
Pfam
PF00249
67 112 46 6.10E-15
IPR001005
CDD
cd00167
69 112 44 5.40E-10 –
MobiDBLite
mobidb-lite
174 229 56 – –
PANTHER
PTHR10641:SF546
275 377 103 1.30E-158 –
PANTHER
PTHR10641
275 377 103 1.30E-158 –
MobiDBLite
mobidb-lite
324 351 28 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of

Genome browser

LORE1 insertions 2

Expression data

Expression pattern

Expression pattern of Lj1g3v2979210.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj1g3v2979210.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.