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Lj1g3v3006720.1

Overview

Field Value
Gene ID Lj1g3v3006720
Transcript ID Lj1g3v3006720.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: zinc finger RNA-binding protein-like [Cicer arietinum] gi|502126918|ref|XP_004499491.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
1 48 48 – –
PANTHER
PTHR23067
126 144 19 4.80E-40 –
PANTHER
PTHR23067:SF41
126 144 19 4.80E-40 –
PANTHER
PTHR23067
180 324 145 4.80E-40 –
PANTHER
PTHR23067:SF41
180 324 145 4.80E-40 –
SUPERFAMILY
SSF57667
189 229 41 5.21E-09 –
SMART
SM00451
194 228 35 1.70E-04
IPR003604
SMART
SM00355
197 221 25 10
IPR015880
Pfam
PF12874
198 221 24 3.30E-05 –
MobiDBLite
mobidb-lite
229 266 38 – –
SMART
SM00451
289 323 35 0.44
IPR003604
SUPERFAMILY
SSF57667
290 322 33 1.98E-08 –
SMART
SM00355
292 316 25 6.9
IPR015880
Pfam
PF12874
293 316 24 5.70E-07 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003676
Molecular function Nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
Subterm of
GO:0008270
Molecular function Zinc ion binding Interacting selectively and non-covalently with zinc (Zn) ions.
Subterm of

Genome browser

LORE1 insertions 15

Expression data

Expression pattern

Expression pattern of Lj1g3v3006720.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj1g3v3006720.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.