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| Field | Value |
|---|---|
| Gene ID | Lj1g3v3103940 |
| Transcript ID | Lj1g3v3103940.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | Protein YIF1B-B [Medicago truncatula] gi|357502653|ref|XP_003621615.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 267 | 267 | 5.00E-169 | ||
| Phobius | 1 | 121 | 121 | – | – | |
| MobiDBLite | 1 | 26 | 26 | – | – | |
| PANTHER | 1 | 267 | 267 | 5.00E-169 | – | |
| Pfam | 45 | 264 | 220 | 6.20E-57 | – | |
| TMHMM | 122 | 144 | 23 | – | – | |
| Phobius | 122 | 144 | 23 | – | – | |
| Phobius | 145 | 149 | 5 | – | – | |
| Phobius | 150 | 169 | 20 | – | – | |
| TMHMM | 151 | 169 | 19 | – | – | |
| Phobius | 170 | 180 | 11 | – | – | |
| Phobius | 181 | 203 | 23 | – | – | |
| Phobius | 204 | 208 | 5 | – | – | |
| TMHMM | 205 | 227 | 23 | – | – | |
| Phobius | 209 | 227 | 19 | – | – | |
| Phobius | 228 | 247 | 20 | – | – | |
| TMHMM | 248 | 265 | 18 | – | – | |
| Phobius | 248 | 265 | 18 | – | – | |
| Coils | 266 | 267 | 2 | – | – | |
| Phobius | 266 | 267 | 2 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Endoplasmic reticulum membrane | The lipid bilayer surrounding the endoplasmic reticulum. | ||
| Biological process | ER to Golgi vesicle-mediated transport | The directed movement of substances from the endoplasmic reticulum (ER) to the Golgi, mediated by COP II vesicles. Small COP II coated vesicles form from the ER and then fuse directly with the cis-Golgi. Larger structures are transported along microtubules to the cis-Golgi. |
Expression pattern of Lj1g3v3103940.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj1g3v3103940.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.