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| Field | Value |
|---|---|
| Gene ID | Lj1g3v3105100 |
| Transcript ID | Lj1g3v3105100.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: pentatricopeptide repeat-containing protein At3g05340-like [Cicer arietinum] gi|502113345|ref|XP_004494620.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 15 | 35 | 21 | 0 | – | |
| PANTHER | 15 | 35 | 21 | 0 | – | |
| ProSiteProfiles | 38 | 68 | 31 | 5.404 | ||
| PANTHER | 51 | 596 | 546 | 0 | – | |
| PANTHER | 51 | 596 | 546 | 0 | – | |
| ProSiteProfiles | 81 | 111 | 31 | 9.701 | ||
| TIGRFAM | 84 | 110 | 27 | 2.10E-05 | ||
| Pfam | 84 | 109 | 26 | 1.20E-06 | ||
| Gene3D | 84 | 108 | 25 | 1.90E-09 | ||
| Pfam | 112 | 161 | 50 | 2.50E-08 | ||
| ProSiteProfiles | 112 | 146 | 35 | 10.665 | ||
| TIGRFAM | 114 | 143 | 30 | 3.70E-07 | ||
| ProSiteProfiles | 185 | 215 | 31 | 6.325 | ||
| Pfam | 216 | 257 | 42 | 3.20E-09 | ||
| ProSiteProfiles | 216 | 250 | 35 | 10.907 | ||
| TIGRFAM | 218 | 252 | 35 | 4.80E-06 | ||
| Gene3D | 227 | 228 | 2 | 1.90E-09 | ||
| ProSiteProfiles | 251 | 285 | 35 | 5.229 | ||
| ProSiteProfiles | 286 | 316 | 31 | 6.906 | ||
| Gene3D | 289 | 347 | 59 | 1.90E-09 | ||
| Pfam | 291 | 312 | 22 | 0.28 | ||
| ProSiteProfiles | 317 | 351 | 35 | 8.385 | ||
| Pfam | 319 | 349 | 31 | 0.2 | ||
| Gene3D | 384 | 462 | 79 | 1.90E-09 | ||
| ProSiteProfiles | 387 | 417 | 31 | 8.659 | ||
| Pfam | 417 | 465 | 49 | 1.60E-10 | ||
| ProSiteProfiles | 418 | 452 | 35 | 12.167 | ||
| TIGRFAM | 420 | 453 | 34 | 6.90E-07 | ||
| ProSiteProfiles | 453 | 488 | 36 | 7.892 | ||
| ProSiteProfiles | 489 | 523 | 35 | 6.259 | ||
| Gene3D | 553 | 581 | 29 | 1.90E-09 | ||
| ProSiteProfiles | 555 | 589 | 35 | 6.708 | ||
| Pfam | 592 | 650 | 59 | 2.50E-07 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of Lj1g3v3105100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj1g3v3105100.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.