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Lj1g3v3329450.1

Overview

Field Value
Gene ID Lj1g3v3329450
Transcript ID Lj1g3v3329450.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: serine/threonine-protein kinase VRK1-like [Cicer arietinum] gi|502100326|ref|XP_004491691.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
1 30 30 – –
MobiDBLite
mobidb-lite
54 101 48 – –
PANTHER
PTHR11909
67 668 602 0 –
PANTHER
PTHR11909:SF146
67 668 602 0 –
SMART
SM00220
108 402 295 8.00E-12
IPR000719
SUPERFAMILY
SSF56112
108 391 284 6.29E-60
IPR011009
CDD
cd14016
108 383 276 2.58E-131 –
Pfam
PF00069
108 396 289 7.50E-17
IPR000719
ProSiteProfiles
PS50011
108 393 286 23.156
IPR000719
Gene3D
G3DSA:3.30.200.20
112 195 84 2.60E-23 –
ProSitePatterns
PS00107
114 146 33 –
IPR017441
Gene3D
G3DSA:1.10.510.10
198 380 183 2.10E-25 –
ProSitePatterns
PS00108
234 246 13 –
IPR008271
MobiDBLite
mobidb-lite
397 423 27 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0004672
Molecular function Protein kinase activity Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP.
Subterm of
GO:0005524
Molecular function ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
Subterm of
GO:0006468
Biological process Protein phosphorylation The process of introducing a phosphate group on to a protein.
Subterm of

Genome browser

LORE1 insertions 9

Expression data

Expression pattern

Expression pattern of Lj1g3v3329450.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj1g3v3329450.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.