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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • PTHR11909
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 74 results. Now displaying 1 of 2 with 50 rows per page. This search has taken 0.016s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0096879.1
n.a. PREDICTED: casein kinase I isoform delta-like [Brachypodium distachyon] gi|357136122|ref|XP_003569655.1| chr0 40890960 40892300 +
1 domain prediction
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Lj0g3v0096889.1
n.a. Casein kinase I isoform delta-like protein [Medicago truncatula] gi|357454571|ref|XP_003597566.1| chr0 40892247 40894840 +
1 domain prediction
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Lj0g3v0251489.1
n.a. Casein kinase I protein [Theobroma cacao] gi|508782527|gb|EOY29783.1| chr0 130450827 130456844 +
1 domain prediction
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Lj0g3v0321749.1
n.a. PREDICTED: casein kinase I isoform delta-like isoform 2 [Glycine max] gi|356548073|ref|XP_003542428.1| chr0 167964768 167972994 +
1 domain prediction
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Lj1g3v0318450.1
n.a. PREDICTED: casein kinase I isoform delta-like [Cicer arietinum] gi|502124307|ref|XP_004498472.1| chr1 3799661 3812312 -
1 domain prediction
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Lj1g3v0318450.2
n.a. PREDICTED: casein kinase I isoform delta-like [Cicer arietinum] gi|502124307|ref|XP_004498472.1| chr1 3799661 3812312 -
1 domain prediction
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Lj1g3v0828070.3
n.a. Casein kinase I isoform delta-like protein [Medicago truncatula] gi|357439363|ref|XP_003589958.1| chr1 10759348 10764588 +
1 domain prediction
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Lj1g3v2065420.1
n.a. PREDICTED: casein kinase I isoform delta-like [Glycine max] gi|356515601|ref|XP_003526487.1| chr1 24377875 24383177 +
1 domain prediction
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Lj1g3v2093240.1
n.a. Casein kinase I protein [Theobroma cacao] gi|508782527|gb|EOY29783.1| chr1 24659751 24667244 +
1 domain prediction
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Lj1g3v2093240.2
n.a. Casein kinase I protein [Theobroma cacao] gi|508782527|gb|EOY29783.1| chr1 24659751 24667244 +
1 domain prediction
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Lj1g3v3329450.1
n.a. PREDICTED: serine/threonine-protein kinase VRK1-like [Cicer arietinum] gi|502100326|ref|XP_004491691.1| chr1 37656640 37662267 -
1 domain prediction
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Lj1g3v3975030.1
n.a. Casein kinase I isoform alpha [Medicago truncatula] gi|357508675|ref|XP_003624626.1| chr1 46696897 46704582 +
1 domain prediction
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Lj1g3v4515530.1
n.a. PREDICTED: casein kinase I isoform delta-like [Glycine max] gi|356505039|ref|XP_003521300.1| chr1 52962873 52965626 +
1 domain prediction
 –
Lj1g3v4515550.1
n.a. PREDICTED: casein kinase I isoform delta-like [Cicer arietinum] gi|502110079|ref|XP_004493794.1| chr1 52967445 52970100 +
1 domain prediction
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Lj2g3v0814570.1
n.a. PREDICTED: casein kinase I isoform delta-like [Glycine max] gi|356531301|ref|XP_003534216.1| chr2 12826736 12830927 +
1 domain prediction
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Lj3g3v0579140.1
n.a. PREDICTED: probable serine/threonine-protein kinase cdc7-like [Cicer arietinum] gi|502173474|ref|XP_004515338.1| chr3 6341798 6346916 +
1 domain prediction
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Lj3g3v1238790.1
n.a. casein kinase I [Sesamum indicum] gi|298362903|gb|ADI78885.1| chr3 16012439 16013923 -
1 domain prediction
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Lj3g3v1238810.1
n.a. Casein kinase I protein [Theobroma cacao] gi|508782527|gb|EOY29783.1| chr3 16016435 16018111 -
1 domain prediction
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Lj3g3v2316630.1
n.a. casein kinase I [Sesamum indicum] gi|298362903|gb|ADI78885.1| chr3 28495711 28501346 +
1 domain prediction
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Lj3g3v2664370.1
n.a. PREDICTED: casein kinase I isoform delta-like [Cicer arietinum] gi|502156302|ref|XP_004510406.1| chr3 32497936 32501988 -
1 domain prediction
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Lj4g3v2172750.1
n.a. PREDICTED: casein kinase I isoform delta-like isoform 1 [Glycine max] gi|356561891|ref|XP_003549210.1| chr4 29917245 29923543 +
1 domain prediction
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Lj4g3v3060300.1
n.a. PREDICTED: casein kinase I isoform delta-like [Glycine max] gi|356523722|ref|XP_003530484.1| chr4 40773653 40779071 -
1 domain prediction
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Lj4g3v3060300.3
n.a. PREDICTED: casein kinase I isoform delta-like [Glycine max] gi|356513159|ref|XP_003525281.1| chr4 40775939 40779071 -
1 domain prediction
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Lj5g3v1189080.1
n.a. PREDICTED: casein kinase I isoform delta-like isoform 1 [Vitis vinifera] gi|359477666|ref|XP_002285287.2| chr5 19167546 19173773 -
1 domain prediction
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Lj5g3v2292570.1
n.a. PREDICTED: casein kinase I isoform delta-like [Cicer arietinum] gi|502121550|ref|XP_004497365.1| chr5 33573731 33581564 +
1 domain prediction
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Lj5g3v2292570.2
n.a. PREDICTED: serine/threonine-protein kinase VRK1-like [Cicer arietinum] gi|502100326|ref|XP_004491691.1| chr5 33573731 33584701 +
1 domain prediction
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Lj6g3v0027690.1
n.a. PREDICTED: casein kinase I isoform delta-like isoform 1 [Glycine max] gi|356535368|ref|XP_003536218.1| chr6 378084 385560 +
1 domain prediction
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Lj6g3v0027690.2
n.a. PREDICTED: casein kinase I isoform delta-like isoform 1 [Vitis vinifera] gi|359477666|ref|XP_002285287.2| chr6 378084 385560 +
1 domain prediction
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Lj6g3v0027690.3
n.a. PREDICTED: casein kinase I isoform delta-like isoform 1 [Vitis vinifera] gi|359477666|ref|XP_002285287.2| chr6 383314 385560 +
1 domain prediction
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Lj6g3v0027690.4
n.a. PREDICTED: casein kinase I isoform delta-like isoform 1 [Vitis vinifera] gi|359477666|ref|XP_002285287.2| chr6 383320 385560 +
1 domain prediction
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LotjaGi1g1v0175900.1
n.a. Protein kinase family protein; TAIR: AT4G28880.1 casein kinase I-like 3; Swiss-Prot: sp|Q93Z18|CKL3_ARATH Casein kinase 1-like protein 3; TrEMBL-Plants: tr|A0A072VDN0|A0A072VDN0_MEDTR Casein kinase; Found in the gene: LotjaGi1g1v0175900 LjG1.1_chr1 33735715 33749489 -
1 domain prediction
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LotjaGi1g1v0175900.2
n.a. Protein kinase family protein; TAIR: AT4G28880.1 casein kinase I-like 3; Swiss-Prot: sp|Q93Z18|CKL3_ARATH Casein kinase 1-like protein 3; TrEMBL-Plants: tr|I1K9C5|I1K9C5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0175900 LjG1.1_chr1 33735715 33749489 -
1 domain prediction
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LotjaGi1g1v0175900.3
n.a. Protein kinase family protein; TAIR: AT4G28880.1 casein kinase I-like 3; Swiss-Prot: sp|Q93Z18|CKL3_ARATH Casein kinase 1-like protein 3; TrEMBL-Plants: tr|A0A072VDN0|A0A072VDN0_MEDTR Casein kinase; Found in the gene: LotjaGi1g1v0175900 LjG1.1_chr1 33735715 33749489 -
1 domain prediction
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LotjaGi1g1v0175900.4
n.a. Protein kinase family protein; TAIR: AT4G28880.1 casein kinase I-like 3; Swiss-Prot: sp|Q93Z18|CKL3_ARATH Casein kinase 1-like protein 3; TrEMBL-Plants: tr|A0A072VDN0|A0A072VDN0_MEDTR Casein kinase; Found in the gene: LotjaGi1g1v0175900 LjG1.1_chr1 33736674 33749450 -
1 domain prediction
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LotjaGi1g1v0403900.1
n.a. Protein kinase family protein; TAIR: AT4G28860.1 casein kinase I-like 4; Swiss-Prot: sp|Q8LPI7|CKL4_ARATH Casein kinase 1-like protein 4; TrEMBL-Plants: tr|I1K9C5|I1K9C5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0403900 LjG1.1_chr1 89283016 89289279 +
1 domain prediction
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LotjaGi1g1v0408500.1
n.a. Kinase family protein; TAIR: AT2G25760.1 Protein kinase family protein; Swiss-Prot: sp|Q852L0|HD16N_ORYSJ Casein kinase 1-like protein HD16; TrEMBL-Plants: tr|A0A0L9UH17|A0A0L9UH17_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0408500 LjG1.1_chr1 89841292 89849768 +
1 domain prediction
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LotjaGi1g1v0408500.2
n.a. Kinase family protein; TAIR: AT2G25760.1 Protein kinase family protein; Swiss-Prot: sp|Q852L0|HD16N_ORYSJ Casein kinase 1-like protein HD16; TrEMBL-Plants: tr|A0A0L9UH17|A0A0L9UH17_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0408500 LjG1.1_chr1 89841352 89849147 +
1 domain prediction
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LotjaGi1g1v0408500.3
n.a. Kinase family protein; TAIR: AT2G25760.1 Protein kinase family protein; Swiss-Prot: sp|Q852L0|HD16N_ORYSJ Casein kinase 1-like protein HD16; TrEMBL-Plants: tr|A0A0L9UH17|A0A0L9UH17_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0408500 LjG1.1_chr1 89841369 89849301 +
1 domain prediction
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LotjaGi1g1v0408500.4
n.a. Kinase family protein; TAIR: AT2G25760.1 Protein kinase family protein; Swiss-Prot: sp|Q852L0|HD16N_ORYSJ Casein kinase 1-like protein HD16; TrEMBL-Plants: tr|A0A0L9UH17|A0A0L9UH17_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0408500 LjG1.1_chr1 89841427 89849067 +
1 domain prediction
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LotjaGi1g1v0408500.5
n.a. Kinase family protein; TAIR: AT2G25760.1 Protein kinase family protein; Swiss-Prot: sp|Q852L0|HD16N_ORYSJ Casein kinase 1-like protein HD16; TrEMBL-Plants: tr|A0A0L9UH17|A0A0L9UH17_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0408500 LjG1.1_chr1 89841571 89847044 +
1 domain prediction
 –
LotjaGi1g1v0553700.1
n.a. Kinase family protein; TAIR: AT3G13670.1 Protein kinase family protein; Swiss-Prot: sp|Q852L0|HD16N_ORYSJ Casein kinase 1-like protein HD16; TrEMBL-Plants: tr|A0A0S3RQS5|A0A0S3RQS5_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0553700 LjG1.1_chr1 108561178 108567649 -
1 domain prediction
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LotjaGi1g1v0642600.1
n.a. Kinase family protein; TAIR: AT3G03940.1 Protein kinase family protein; Swiss-Prot: sp|Q852L0|HD16N_ORYSJ Casein kinase 1-like protein HD16; TrEMBL-Plants: tr|A0A151T9R1|A0A151T9R1_CAJCA Casein kinase I isoform delta; Found in the gene: LotjaGi1g1v0642600 LjG1.1_chr1 119983234 119991558 +
1 domain prediction
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LotjaGi1g1v0642600.2
n.a. Kinase family protein; TAIR: AT3G03940.1 Protein kinase family protein; Swiss-Prot: sp|Q852L0|HD16N_ORYSJ Casein kinase 1-like protein HD16; TrEMBL-Plants: tr|A0A151T9R1|A0A151T9R1_CAJCA Casein kinase I isoform delta; Found in the gene: LotjaGi1g1v0642600 LjG1.1_chr1 119984142 119990997 +
1 domain prediction
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LotjaGi1g1v0707300.1
n.a. Protein kinase family protein; TAIR: AT4G28540.1 casein kinase I-like 6; Swiss-Prot: sp|Q8LPJ1|CKL6_ARATH Casein kinase 1-like protein 6; TrEMBL-Plants: tr|A0A0B2PNU8|A0A0B2PNU8_GLYSO Casein kinase I isoform delta-like; Found in the gene: LotjaGi1g1v0707300 LjG1.1_chr1 127558847 127567002 -
1 domain prediction
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LotjaGi1g1v0707300.2
n.a. Protein kinase family protein; TAIR: AT4G28540.1 casein kinase I-like 6; Swiss-Prot: sp|Q8LPJ1|CKL6_ARATH Casein kinase 1-like protein 6; TrEMBL-Plants: tr|A0A0B2PNU8|A0A0B2PNU8_GLYSO Casein kinase I isoform delta-like; Found in the gene: LotjaGi1g1v0707300 LjG1.1_chr1 127559854 127565678 -
1 domain prediction
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LotjaGi1g1v0707300.3
n.a. Protein kinase family protein; TAIR: AT3G23340.1 casein kinase I-like 10; Swiss-Prot: sp|Q9LW62|CKL10_ARATH Casein kinase 1-like protein 10; TrEMBL-Plants: tr|A0A151T5Y4|A0A151T5Y4_CAJCA Uncharacterized protein; Found in the gene: LotjaGi1g1v0707300 LjG1.1_chr1 127559854 127566378 -
1 domain prediction
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LotjaGi2g1v0221200.1
n.a. Protein kinase family protein; TAIR: AT4G28880.1 casein kinase I-like 3; Swiss-Prot: sp|Q93Z18|CKL3_ARATH Casein kinase 1-like protein 3; TrEMBL-Plants: tr|I3S653|I3S653_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0221200 LjG1.1_chr2 67648685 67655255 +
1 domain prediction
 –
LotjaGi2g1v0221200.2
n.a. Protein kinase family protein; TAIR: AT4G28880.1 casein kinase I-like 3; Swiss-Prot: sp|Q93Z18|CKL3_ARATH Casein kinase 1-like protein 3; TrEMBL-Plants: tr|I3S653|I3S653_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0221200 LjG1.1_chr2 67648732 67654931 +
1 domain prediction
 –
LotjaGi2g1v0221200.3
n.a. Protein kinase family protein; TAIR: AT4G28880.1 casein kinase I-like 3; Swiss-Prot: sp|Q93Z18|CKL3_ARATH Casein kinase 1-like protein 3; TrEMBL-Plants: tr|I3S653|I3S653_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0221200 LjG1.1_chr2 67648760 67654962 +
1 domain prediction
 –
LotjaGi2g1v0221200.4
n.a. Protein kinase family protein; TAIR: AT4G28860.1 casein kinase I-like 4; Swiss-Prot: sp|Q93Z18|CKL3_ARATH Casein kinase 1-like protein 3; TrEMBL-Plants: tr|I3S653|I3S653_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0221200 LjG1.1_chr2 67648889 67653126 +
1 domain prediction
 –