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| Field | Value |
|---|---|
| Gene ID | Lj1g3v3329520 |
| Transcript ID | Lj1g3v3329520.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|357457743|ref|XP_003599152.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 57 | 72 | 16 | 0 | – | |
| PANTHER | 57 | 72 | 16 | 0 | – | |
| ProSiteProfiles | 97 | 127 | 31 | 7.706 | ||
| PANTHER | 99 | 337 | 239 | 0 | – | |
| PANTHER | 99 | 337 | 239 | 0 | – | |
| ProSiteProfiles | 128 | 162 | 35 | 11.093 | ||
| Pfam | 128 | 176 | 49 | 6.10E-08 | ||
| TIGRFAM | 131 | 163 | 33 | 2.40E-06 | ||
| ProSiteProfiles | 163 | 198 | 36 | 7.498 | ||
| ProSiteProfiles | 199 | 229 | 31 | 7.037 | ||
| Gene3D | 216 | 261 | 46 | 3.10E-08 | ||
| ProSiteProfiles | 230 | 264 | 35 | 9.635 | ||
| Pfam | 232 | 262 | 31 | 0.0066 | ||
| TIGRFAM | 232 | 265 | 34 | 0.0019 | ||
| ProSiteProfiles | 265 | 299 | 35 | 5.251 | ||
| ProSiteProfiles | 300 | 334 | 35 | 8.44 | ||
| Pfam | 305 | 330 | 26 | 0.0029 | ||
| TIGRFAM | 305 | 331 | 27 | 0.002 | ||
| Gene3D | 329 | 463 | 135 | 3.10E-08 | ||
| Pfam | 333 | 359 | 27 | 0.024 | ||
| ProSiteProfiles | 366 | 400 | 35 | 6.555 | ||
| ProSiteProfiles | 401 | 431 | 31 | 8.583 | ||
| Pfam | 431 | 478 | 48 | 4.60E-08 | ||
| ProSiteProfiles | 432 | 466 | 35 | 9.832 | ||
| TIGRFAM | 434 | 461 | 28 | 0.0016 | ||
| ProSiteProfiles | 499 | 529 | 31 | 6.96 | ||
| Pfam | 504 | 530 | 27 | 0.77 | ||
| ProSiteProfiles | 530 | 564 | 35 | 9.536 | ||
| Pfam | 532 | 561 | 30 | 0.011 | ||
| TIGRFAM | 532 | 565 | 34 | 0.001 | ||
| PANTHER | 537 | 565 | 29 | 0 | – | |
| PANTHER | 537 | 565 | 29 | 0 | – | |
| Gene3D | 580 | 581 | 2 | 3.10E-08 | ||
| ProSiteProfiles | 601 | 631 | 31 | 6.182 | ||
| PANTHER | 602 | 911 | 310 | 0 | – | |
| PANTHER | 602 | 911 | 310 | 0 | – | |
| Pfam | 631 | 673 | 43 | 1.20E-07 | ||
| ProSiteProfiles | 632 | 666 | 35 | 10.654 | ||
| TIGRFAM | 635 | 667 | 33 | 5.20E-04 | ||
| ProSiteProfiles | 667 | 701 | 35 | 5.842 | ||
| ProSiteProfiles | 702 | 732 | 31 | 5.59 | ||
| ProSiteProfiles | 733 | 767 | 35 | 11.86 | ||
| Gene3D | 734 | 777 | 44 | 3.10E-08 | ||
| Pfam | 736 | 780 | 45 | 6.90E-10 | ||
| TIGRFAM | 736 | 768 | 33 | 4.90E-08 | ||
| ProSiteProfiles | 768 | 802 | 35 | 8.473 | ||
| ProSiteProfiles | 804 | 834 | 31 | 5.415 | ||
| Gene3D | 834 | 873 | 40 | 3.10E-08 | ||
| ProSiteProfiles | 836 | 866 | 31 | 5.404 | ||
| ProSiteProfiles | 870 | 904 | 35 | 6.423 | ||
| Pfam | 907 | 1029 | 123 | 1.50E-37 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of Lj1g3v3329520.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj1g3v3329520.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.