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| Field | Value |
|---|---|
| Gene ID | Lj1g3v3330180 |
| Transcript ID | Lj1g3v3330180.3 |
| Related isoforms 3 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: probable alanine--tRNA ligase, chloroplastic-like [Cicer arietinum] gi|502130599|ref|XP_004500706.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 409 | 409 | 1.40E-290 | – | |
| Pfam | 1 | 400 | 400 | 5.00E-126 | ||
| ProSiteProfiles | 1 | 413 | 413 | 61.401 | ||
| SUPERFAMILY | 1 | 152 | 152 | 2.98E-55 | – | |
| Gene3D | 1 | 148 | 148 | 1.10E-59 | – | |
| CDD | 1 | 148 | 148 | 1.56E-76 | – | |
| PANTHER | 1 | 409 | 409 | 1.40E-290 | – | |
| PRINTS | 106 | 117 | 12 | 1.50E-23 | ||
| PRINTS | 133 | 146 | 14 | 1.50E-23 | ||
| SUPERFAMILY | 153 | 361 | 209 | 1.14E-47 | ||
| PRINTS | 184 | 200 | 17 | 1.50E-23 | ||
| PRINTS | 208 | 221 | 14 | 1.50E-23 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleotide binding | Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. | ||
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Molecular function | Alanine-tRNA ligase activity | Catalysis of the reaction: ATP + L-alanine + tRNA(Ala) = AMP + diphosphate + L-alanyl-tRNA(Ala). | ||
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
| Cellular component | Cytoplasm | All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. | ||
| Biological process | Alanyl-tRNA aminoacylation | The process of coupling alanine to alanyl-tRNA, catalyzed by alanyl-tRNA synthetase. The alanyl-tRNA synthetase is a class-II synthetases. The activated amino acid is transferred to the 3'-OH group of an alanine accetping tRNA. |
Expression pattern of Lj1g3v3330180.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj1g3v3330180.3, powered by CORGI.
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