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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • SSF55681
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 142 results. Now displaying 1 of 3 with 50 rows per page. This search has taken 0.045s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0000769.1
n.a. PREDICTED: asparagine--tRNA ligase, cytoplasmic 1-like [Cicer arietinum] gi|502138744|ref|XP_004503515.1| chr0 328159 328683 -
1 domain prediction
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Lj0g3v0001799.1
n.a. PREDICTED: threonine--tRNA ligase-like isoform X2 [Cicer arietinum] gi|502134625|ref|XP_004502185.1| chr0 500893 504848 -
1 domain prediction
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Lj0g3v0086109.1
n.a. PREDICTED: biotin--protein ligase-like [Cicer arietinum] gi|502130276|ref|XP_004500594.1| chr0 34651978 34652715 -
1 domain prediction
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Lj0g3v0176639.1
n.a. PREDICTED: probable phenylalanyl-tRNA synthetase beta chain-like [Glycine max] gi|356511581|ref|XP_003524503.1| chr0 85368167 85369227 -
1 domain prediction
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Lj0g3v0190569.1
n.a. PREDICTED: lysyl-tRNA synthetase-like [Glycine max] gi|356533832|ref|XP_003535462.1| chr0 93148434 93153071 -
1 domain prediction
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Lj0g3v0203999.1
n.a. Holocarboxylase synthetase hcs2 [Medicago truncatula] gi|357461633|ref|XP_003601098.1| chr0 101142099 101144139 -
1 domain prediction
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Lj0g3v0203999.2
n.a. Holocarboxylase synthetase hcs2 [Medicago truncatula] gi|357461633|ref|XP_003601098.1| chr0 101142099 101143895 -
1 domain prediction
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Lj0g3v0245659.1
n.a. PREDICTED: glycine--tRNA ligase 2, chloroplastic/mitochondrial-like [Fragaria vesca subsp]. vesca] gi|470142584|ref|XP_004306984.1| chr0 127373829 127376155 -
1 domain prediction
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Lj0g3v0274769.1
n.a. PREDICTED: threonine--tRNA ligase-like isoform X2 [Cicer arietinum] gi|502134625|ref|XP_004502185.1| chr0 142460730 142464602 +
1 domain prediction
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Lj0g3v0296079.1
n.a. Asparaginyl-tRNA synthetase [Medicago truncatula] gi|357513179|ref|XP_003626878.1| chr0 153863335 153873524 +
1 domain prediction
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Lj0g3v0296119.1
n.a. PREDICTED: proline--tRNA ligase-like [Cicer arietinum] gi|502132994|ref|XP_004501611.1| chr0 153885500 153890210 +
1 domain prediction
 –
Lj0g3v0316529.1
n.a. PREDICTED: phenylalanyl-tRNA synthetase, chloroplastic/mitochondrial-like [Glycine max] gi|356569020|ref|XP_003552705.1| chr0 165332214 165334273 -
1 domain prediction
 –
Lj0g3v0318599.1
n.a. PREDICTED: threonyl-tRNA synthetase, mitochondrial-like [Glycine max] gi|356497888|ref|XP_003517788.1| chr0 166385765 166390591 +
1 domain prediction
 –
Lj0g3v0326999.1
n.a. PREDICTED: phenylalanyl-tRNA synthetase, chloroplastic/mitochondrial-like [Glycine max] gi|356569020|ref|XP_003552705.1| chr0 170936878 170940076 -
1 domain prediction
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Lj0g3v0358409.1
n.a. PREDICTED: aspartate--tRNA ligase, cytoplasmic-like [Cicer arietinum] gi|502162327|ref|XP_004512467.1| chr0 188656300 188660287 +
1 domain prediction
 –
Lj1g3v0052040.1
n.a. PREDICTED: glycine--tRNA ligase 2, chloroplastic/mitochondrial-like isoform X2 [Cicer arietinum] gi|502173505|ref|XP_004515345.1| chr1 310541 311427 -
1 domain prediction
 –
Lj1g3v0052060.1
n.a. PREDICTED: glycyl-tRNA synthetase 2, chloroplastic/mitochondrial-like [Glycine max] gi|356503250|ref|XP_003520424.1| chr1 315889 317702 -
1 domain prediction
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Lj1g3v0054690.1
n.a. PREDICTED: probable phenylalanine--tRNA ligase alpha subunit-like [Cicer arietinum] gi|502080886|ref|XP_004486713.1| chr1 641803 649767 -
1 domain prediction
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Lj1g3v1514800.1
n.a. Seryl-tRNA synthetase [Medicago truncatula] gi|357465107|ref|XP_003602835.1| chr1 18000084 18004494 -
1 domain prediction
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Lj1g3v1514800.2
n.a. Seryl-tRNA synthetase [Medicago truncatula] gi|357465105|ref|XP_003602834.1| chr1 18000084 18004494 -
1 domain prediction
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Lj1g3v1603220.1
n.a. PREDICTED: plastidial lipoyltransferase 2-like [Glycine max] gi|356509700|ref|XP_003523584.1| chr1 19238342 19239021 +
1 domain prediction
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Lj1g3v2979150.1
n.a. Lipoate protein ligase-like protein [Medicago truncatula] gi|357501933|ref|XP_003621255.1| chr1 33802110 33808464 +
1 domain prediction
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Lj1g3v3328940.1
n.a. PREDICTED: glycine--tRNA ligase 1, mitochondrial-like [Cicer arietinum] gi|502127199|ref|XP_004499600.1| chr1 37408733 37413097 +
1 domain prediction
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Lj1g3v3330180.1
n.a. PREDICTED: probable alanyl-tRNA synthetase, chloroplastic-like [Glycine max] gi|356516209|ref|XP_003526788.1| chr1 37941452 37954161 -
1 domain prediction
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Lj1g3v3330180.2
n.a. PREDICTED: probable alanyl-tRNA synthetase, chloroplastic-like [Glycine max] gi|356516209|ref|XP_003526788.1| chr1 37941452 37957052 -
1 domain prediction
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Lj1g3v3330180.3
n.a. PREDICTED: probable alanine--tRNA ligase, chloroplastic-like [Cicer arietinum] gi|502130599|ref|XP_004500706.1| chr1 37941452 37957258 -
1 domain prediction
 –
Lj1g3v4591200.1
n.a. PREDICTED: histidyl-tRNA synthetase-like [Glycine max] gi|356505252|ref|XP_003521406.1| chr1 54981260 54992780 +
1 domain prediction
 –
Lj1g3v4830240.1
n.a. PREDICTED: bifunctional aminoacyl-tRNA synthetase-like [Glycine max] gi|356572846|ref|XP_003554576.1| chr1 58320838 58325597 -
1 domain prediction
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Lj2g3v0878960.1
n.a. PREDICTED: lysyl-tRNA synthetase-like [Glycine max] gi|356504551|ref|XP_003521059.1| chr2 13523356 13534951 +
1 domain prediction
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Lj2g3v1378840.1
n.a. PREDICTED: threonine--tRNA ligase, mitochondrial-like [Cicer arietinum] gi|502093025|ref|XP_004489863.1| chr2 21766122 21773133 -
1 domain prediction
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Lj2g3v1378840.2
n.a. PREDICTED: threonyl-tRNA synthetase, mitochondrial-like [Glycine max] gi|356497888|ref|XP_003517788.1| chr2 21766122 21774927 -
1 domain prediction
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Lj2g3v1468010.1
n.a. PREDICTED: bifunctional aminoacyl-tRNA synthetase-like [Glycine max] gi|356572846|ref|XP_003554576.1| chr2 23284510 23286437 +
1 domain prediction
 –
Lj2g3v3106130.1
n.a. PREDICTED: aspartate--tRNA ligase, cytoplasmic-like [Cicer arietinum] gi|502125110|ref|XP_004498802.1| chr2 39971149 39975627 +
1 domain prediction
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Lj3g3v2656760.1
n.a. PREDICTED: asparagine--tRNA ligase, cytoplasmic 1-like [Cicer arietinum] gi|502138744|ref|XP_004503515.1| chr3 32326609 32330106 +
1 domain prediction
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Lj3g3v3312860.1
n.a. PREDICTED: probable serine/threonine-protein kinase GCN2-like [Cicer arietinum] gi|502148953|ref|XP_004507335.1| chr3 40392865 40412775 +
1 domain prediction
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Lj3g3v3312860.3
n.a. PREDICTED: probable serine/threonine-protein kinase GCN2-like [Glycine max] gi|356544520|ref|XP_003540698.1| chr3 40406534 40412775 +
1 domain prediction
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Lj3g3v3348650.1
n.a. PREDICTED: probable phenylalanine--tRNA ligase alpha subunit-like [Cicer arietinum] gi|502080886|ref|XP_004486713.1| chr3 41139554 41148251 +
1 domain prediction
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Lj3g3v3527150.1
n.a. PREDICTED: alanine--tRNA ligase-like [Cicer arietinum] gi|502144716|ref|XP_004505726.1| chr3 43018338 43022290 -
1 domain prediction
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Lj4g3v1259110.1
n.a. PREDICTED: asparagine--tRNA ligase, chloroplastic/mitochondrial-like [Cicer arietinum] gi|502152388|ref|XP_004508904.1| chr4 18504755 18513486 -
1 domain prediction
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Lj4g3v1259110.2
n.a. PREDICTED: asparagine--tRNA ligase, chloroplastic/mitochondrial-like [Cicer arietinum] gi|502152388|ref|XP_004508904.1| chr4 18504755 18513486 -
1 domain prediction
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Lj4g3v1748330.2
n.a. PREDICTED: probable phenylalanyl-tRNA synthetase beta chain-like [Glycine max] gi|356562670|ref|XP_003549592.1| chr4 25025978 25029857 +
1 domain prediction
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Lj4g3v2120450.1
n.a. PREDICTED: lysyl-tRNA synthetase-like [Glycine max] gi|356533832|ref|XP_003535462.1| chr4 29030056 29034971 +
1 domain prediction
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Lj4g3v3020560.1
n.a. PREDICTED: asparagine--tRNA ligase, cytoplasmic 1-like [Cicer arietinum] gi|502138744|ref|XP_004503515.1| chr4 40552556 40555467 -
1 domain prediction
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Lj4g3v3109640.1
n.a. PREDICTED: aspartate--tRNA ligase-like isoform X1 [Cicer arietinum] gi|502138374|ref|XP_004503382.1| chr4 41361493 41370376 -
1 domain prediction
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Lj4g3v3109640.2
n.a. PREDICTED: aspartate--tRNA ligase-like isoform X1 [Cicer arietinum] gi|502138374|ref|XP_004503382.1| chr4 41361493 41367484 -
1 domain prediction
 –
Lj4g3v3112980.1
n.a. PREDICTED: histidine--tRNA ligase-like [Cicer arietinum] gi|502122299|ref|XP_004497677.1| chr4 41487075 41493855 -
1 domain prediction
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Lj5g3v0508080.1
n.a. PREDICTED: aspartate--tRNA ligase, cytoplasmic-like [Cicer arietinum] gi|502125110|ref|XP_004498802.1| chr5 4993524 4998002 -
1 domain prediction
 –
Lj5g3v0656970.1
n.a. PREDICTED: histidyl-tRNA synthetase-like [Glycine max] gi|356505252|ref|XP_003521406.1| chr5 8976775 8984120 -
1 domain prediction
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Lj5g3v0656990.1
n.a. PREDICTED: histidine--tRNA ligase-like isoform X2 [Cicer arietinum] gi|502111238|ref|XP_004493995.1| chr5 8985722 8988300 -
1 domain prediction
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Lj5g3v1494610.1
n.a. PREDICTED: seryl-tRNA synthetase-like [Glycine max] gi|356576773|ref|XP_003556504.1| chr5 21638393 21651821 +
1 domain prediction
 –