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Lj1g3v3342760.1

Overview

Field Value
Gene ID Lj1g3v3342760
Transcript ID Lj1g3v3342760.1
Lotus japonicus genome version MG20 v3.0
Description MYB domain class transcription factor [Theobroma cacao] gi|508705798|gb|EOX97694.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR10641:SF598
1 237 237 7.00E-130 –
PANTHER
PTHR10641
1 237 237 7.00E-130 –
Gene3D
G3DSA:1.10.10.60
5 64 60 4.00E-24
IPR009057
ProSiteProfiles
PS51294
9 61 53 16.576
IPR017930
SUPERFAMILY
SSF46689
13 108 96 8.41E-29
IPR009057
SMART
SM00717
13 63 51 2.10E-13
IPR001005
Pfam
PF00249
14 61 48 2.00E-15
IPR001005
CDD
cd00167
16 61 46 9.53E-11 –
ProSiteProfiles
PS51294
62 116 55 27.76
IPR017930
Gene3D
G3DSA:1.10.10.60
65 116 52 3.50E-27
IPR009057
SMART
SM00717
66 114 49 7.00E-17
IPR001005
Pfam
PF00249
67 111 45 1.40E-15
IPR001005
CDD
cd00167
69 112 44 3.95E-12 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of

Genome browser

LORE1 insertions 4

Expression data

Expression pattern

Expression pattern of Lj1g3v3342760.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj1g3v3342760.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.