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| Field | Value |
|---|---|
| Gene ID | Lj1g3v3381300 |
| Transcript ID | Lj1g3v3381300.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: pentatricopeptide repeat-containing protein At4g21065-like [Cicer arietinum] gi|502130851|ref|XP_004500791.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 11 | 447 | 437 | 3.70E-282 | – | |
| PANTHER | 11 | 447 | 437 | 3.70E-282 | – | |
| ProSiteProfiles | 59 | 92 | 34 | 6.204 | ||
| ProSiteProfiles | 101 | 135 | 35 | 6.336 | ||
| ProSiteProfiles | 136 | 166 | 31 | 8.188 | ||
| Gene3D | 151 | 300 | 150 | 6.80E-05 | ||
| ProSiteProfiles | 167 | 201 | 35 | 11.312 | ||
| Pfam | 167 | 214 | 48 | 2.10E-09 | ||
| TIGRFAM | 169 | 202 | 34 | 4.80E-07 | ||
| ProSiteProfiles | 202 | 232 | 31 | 5.382 | ||
| ProSiteProfiles | 238 | 268 | 31 | 6.336 | ||
| Pfam | 243 | 267 | 25 | 0.0067 | ||
| Pfam | 268 | 315 | 48 | 6.90E-11 | ||
| ProSiteProfiles | 269 | 303 | 35 | 11.466 | ||
| TIGRFAM | 271 | 305 | 35 | 4.80E-07 | ||
| ProSiteProfiles | 304 | 339 | 36 | 8.276 | ||
| TIGRFAM | 307 | 340 | 34 | 4.30E-04 | ||
| ProSiteProfiles | 340 | 370 | 31 | 6.248 | ||
| Pfam | 344 | 368 | 25 | 0.79 | ||
| Gene3D | 370 | 424 | 55 | 6.80E-05 | ||
| ProSiteProfiles | 372 | 406 | 35 | 7.3 | ||
| Pfam | 442 | 566 | 125 | 1.20E-38 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of Lj1g3v3381300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj1g3v3381300.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.