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Lj1g3v3438940.1

Overview

Field Value
Gene ID Lj1g3v3438940
Transcript ID Lj1g3v3438940.1
Lotus japonicus genome version MG20 v3.0
Description pectin methylesterase [Sesbania rostrata] gi|20269071|emb|CAD29733.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Phobius
CYTOPLASMIC_DOMAIN
1 19 19 – –
PANTHER
PTHR31707:SF32
13 554 542 0 –
PANTHER
PTHR31707
13 554 542 0 –
Phobius
TRANSMEMBRANE
20 40 21 – –
TMHMM
TMhelix
20 39 20 – –
Phobius
NON_CYTOPLASMIC_DOMAIN
41 554 514 – –
SMART
SM00856
47 196 150 2.50E-13
IPR006501
Gene3D
G3DSA:1.20.140.40
55 197 143 6.00E-18
IPR006501
SUPERFAMILY
SSF101148
55 196 142 1.06E-17
IPR006501
TIGRFAM
TIGR01614
55 194 140 1.60E-14
IPR006501
Pfam
PF04043
55 196 142 2.40E-14
IPR006501
CDD
cd15799
57 200 144 3.27E-33 –
SUPERFAMILY
SSF51126
239 553 315 5.97E-111
IPR011050
Gene3D
G3DSA:2.160.20.10
240 551 312 1.20E-118
IPR012334
Pfam
PF01095
241 540 300 7.10E-144
IPR000070
ProSitePatterns
PS00800
266 285 20 –
IPR018040
ProSitePatterns
PS00503
385 394 10 –
IPR033131

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0004857
Molecular function Enzyme inhibitor activity Binds to and stops, prevents or reduces the activity of an enzyme.
Subterm of
GO:0030599
Molecular function Pectinesterase activity Catalysis of the reaction: pectin + n H2O = n methanol + pectate.
Subterm of
GO:0042545
Biological process Cell wall modification The series of events leading to chemical and structural alterations of an existing cell wall that can result in loosening, increased extensibility or disassembly.
Subterm of

Genome browser

LORE1 insertions 16

Expression data

Expression pattern

Expression pattern of Lj1g3v3438940.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj1g3v3438940.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.