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| Field | Value |
|---|---|
| Gene ID | Lj1g3v3542660 |
| Transcript ID | Lj1g3v3542660.4 |
| Related isoforms 3 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: pentatricopeptide repeat-containing protein At5g48730, chloroplastic-like [Cicer arietinum] gi|502167858|ref|XP_004514268.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 3 | 254 | 252 | 8.20E-166 | – | |
| PANTHER | 3 | 254 | 252 | 8.20E-166 | – | |
| Gene3D | 56 | 138 | 83 | 3.10E-08 | ||
| ProSiteProfiles | 76 | 110 | 35 | 9.646 | ||
| TIGRFAM | 80 | 112 | 33 | 3.10E-06 | ||
| Pfam | 83 | 108 | 26 | 7.20E-04 | ||
| ProSiteProfiles | 111 | 141 | 31 | 10.358 | ||
| TIGRFAM | 114 | 148 | 35 | 3.20E-08 | ||
| Pfam | 114 | 158 | 45 | 4.80E-14 | ||
| ProSiteProfiles | 147 | 181 | 35 | 9.109 | ||
| Gene3D | 174 | 246 | 73 | 3.10E-08 | ||
| Pfam | 181 | 229 | 49 | 1.90E-10 | ||
| ProSiteProfiles | 182 | 217 | 36 | 10.753 | ||
| TIGRFAM | 184 | 219 | 36 | 2.90E-09 | ||
| ProSiteProfiles | 218 | 252 | 35 | 9.197 | ||
| TIGRFAM | 223 | 254 | 32 | 0.0017 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of Lj1g3v3542660.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj1g3v3542660.4, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.